Literature DB >> 18496591

Position and Orientation Distributions for Locally Self-Avoiding Walks in the Presence of Obstacles.

Aris Skliros1, Gregory S Chirikjian.   

Abstract

This paper presents a new approach to study the statistics of lattice random walks in the presence of obstacles and local self-avoidance constraints (excluded volume). By excluding sequentially local interactions within a window that slides along the chain, we obtain an upper bound on the number of self-avoiding walks (SAWs) that terminate at each possible position and orientation. Furthermore we develop a technique to include the effects of obstacles. Thus our model is a more realistic approximation of a polymer chain than that of a simple lattice random walk, and it is more computationally tractable than enumeration of obstacle-avoiding SAWs. Our approach is based on the method of the lattice-motion-group convolution. We develop these techniques theoretically and present numerical results for 2-D and 3-D lattices (square, hexagonal, cubic and tetrahedral/diamond). We present numerical results that show how the connectivity constant mu changes with the length of each self-avoiding window and the total length of the chain. Quantities such as R and others such as the probability of ring closure are calculated and compared with results obtained in the literature for the simple random walk case.

Entities:  

Year:  2008        PMID: 18496591      PMCID: PMC2390830          DOI: 10.1016/j.polymer.2008.01.056

Source DB:  PubMed          Journal:  Polymer (Guildf)        ISSN: 0032-3861            Impact factor:   4.430


  3 in total

1.  The Flory isolated-pair hypothesis is not valid for polypeptide chains: implications for protein folding.

Authors:  R V Pappu; R Srinivasan; G D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-07       Impact factor: 11.205

2.  Torsional random walk statistics on lattices using convolution on crystallographic motion groups.

Authors:  Aris Skliros; Gregory S Chirikjian
Journal:  Polymer (Guildf)       Date:  2007-03-23       Impact factor: 4.430

3.  Self-avoiding Lévy walk: A model for very stiff polymers.

Authors: 
Journal:  Phys Rev A       Date:  1990-09-15       Impact factor: 3.140

  3 in total
  1 in total

Review 1.  Modeling loop entropy.

Authors:  Gregory S Chirikjian
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.