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Literature DB >> 18495942

Degeneracy of the genetic code and stability of the base pair at the second position of the anticodon.

Abstract

With an analysis of the structural constraints of the anticodon-codon interaction within the decoding center of the ribosome, we show that the extent of degeneracy at the third position of the anticodon is determined by the level of stability of the base pair at the second position.

Mesh：

Substances：
Anticodon
RNA, Transfer

Year: 2008 PMID： 18495942 PMCID： PMC2441979 DOI： 10.1261/rna.1029808

Source DB: PubMed Journal: RNA ISSN： 1355-8382 Impact factor: 4.942

28 in total

1. Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes.

Authors: P Auffinger; E Westhof
Journal: J Mol Biol Date: 1999-09-24 Impact factor: 5.469

2. In vitro codon-reading specificities of unmodified tRNA molecules with different anticodons on the sequence background of Escherichia coli tRNASer.

Authors: K Takai; H Takaku; S Yokoyama
Journal: Biochem Biophys Res Commun Date: 1999-04-21 Impact factor: 3.575

3. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.

Authors: D H Mathews; J Sabina; M Zuker; D H Turner
Journal: J Mol Biol Date: 1999-05-21 Impact factor: 5.469

4. Idiosyncratic tuning of tRNAs to achieve uniform ribosome binding.

Authors: Mikołaj Olejniczak; Taraka Dale; Richard P Fahlman; Olke C Uhlenbeck
Journal: Nat Struct Mol Biol Date: 2005-08-21 Impact factor: 15.369

Review 5. tRNA's wobble decoding of the genome: 40 years of modification.

Authors: Paul F Agris; Franck A P Vendeix; William D Graham
Journal: J Mol Biol Date: 2006-11-15 Impact factor: 5.469

6. Unconventional methods in codon reading.

Authors: U Lagerkvist
Journal: Bioessays Date: 1986-05 Impact factor: 4.345

7. Identification of 2'-hydroxyl groups required for interaction of a tRNA anticodon stem-loop region with the ribosome.

Authors: U von Ahsen; R Green; R Schroeder; H F Noller
Journal: RNA Date: 1997-01 Impact factor: 4.942

8. Pseudouridine in the anticodon G psi A of plant cytoplasmic tRNA(Tyr) is required for UAG and UAA suppression in the TMV-specific context.

Authors: K Zerfass; H Beier
Journal: Nucleic Acids Res Date: 1992-11-25 Impact factor: 16.971

9. The wobble hypothesis revisited: uridine-5-oxyacetic acid is critical for reading of G-ending codons.

Authors: S Joakim Näsvall; Peng Chen; Glenn R Björk
Journal: RNA Date: 2007-10-17 Impact factor: 4.942

10. Translation of synonymous codons in family boxes by Mycoplasma capricolum tRNAs with unmodified uridine or adenosine at the first anticodon position.

Authors: Y Inagaki; A Kojima; Y Bessho; H Hori; T Ohama; S Osawa
Journal: J Mol Biol Date: 1995-08-25 Impact factor: 5.469

19 in total

1. Unassigned codons, nonsense suppression, and anticodon modifications in the evolution of the genetic code.

Authors: Peter T S van der Gulik; Wouter D Hoff
Journal: J Mol Evol Date: 2011-11-11 Impact factor: 2.395

2. Coadaptation of isoacceptor tRNA genes and codon usage bias for translation efficiency in Aedes aegypti and Anopheles gambiae.

Authors: S K Behura; D W Severson
Journal: Insect Mol Biol Date: 2010-10-29 Impact factor: 3.585

3. Comparative analysis of nuclear tRNA genes of Nasonia vitripennis and other arthropods, and relationships to codon usage bias.

Authors: S K Behura; M Stanke; C A Desjardins; J H Werren; D W Severson
Journal: Insect Mol Biol Date: 2010-02 Impact factor: 3.585

4. Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation.

Authors: Etienne Delannoy; Monique Le Ret; Emmanuelle Faivre-Nitschke; Gonzalo M Estavillo; Marc Bergdoll; Nicolas L Taylor; Barry J Pogson; Ian Small; Patrice Imbault; José M Gualberto
Journal: Plant Cell Date: 2009-07-14 Impact factor: 11.277

9. Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids.

Authors: Naama Wald; Maya Alroy; Maya Botzman; Hanah Margalit
Journal: Nucleic Acids Res Date: 2012-05-11 Impact factor: 16.971

Review 10. On the Origin of Sequence.

Authors: Peter T S van der Gulik
Journal: Life (Basel) Date: 2015-11-16