Literature DB >> 18494451

Electronic structures and spin topologies of gamma-picoliniumyl radicals. A study of the homolysis of N-methyl-gamma-picolinium and of benzo-, dibenzo-, and naphthoannulated analogs.

Rainer Glaser1, Yongqiang Sui, Ujjal Sarkar, Kent S Gates.   

Abstract

Radicals resulting from one-electron reduction of (N-methylpyridinium-4-yl) methyl esters have been reported to yield (N-methylpyridinium-4-yl) methyl radical, or N-methyl-gamma-picoliniumyl for short, by heterolytic cleavage of carboxylate. This new reaction could provide the foundation for a new structural class of bioreductively activated, hypoxia-selective antitumor agents. N-methyl-gamma-picoliniumyl radicals are likely to damage DNA by way of H-abstraction and it is of paramount significance to assess their H-abstraction capabilities. In this context, the benzylic C-H homolyses were studied of toluene (T), gamma-picoline (P, 4-methylpyridine), and N-methyl-gamma-picolinium (1c, 1,4-dimethylpyridinium). With a view to providing capacity for DNA intercalation the properties also were examined of the annulated derivatives 2c (1,4-dimethylquinolinium), 3c (9,10-dimethylacridinium), and 4c (1,4-dimethylbenzo[g]quinolinium). The benzylic C-H homolyses were studied with density functional theory (DFT), perturbation theory (up to MP4SDTQ), and configuration interaction methods (QCISD(T), CCSD(T)). Although there are many similarities between the results obtained here with DFT and CI theory, a number of significant differences occur and these are shown to be caused by methodological differences in the spin density distributions of the radicals. The quality of the wave functions is established by demonstration of internal consistencies and with reference to a number of observable quantities. The analysis of spin polarization emphasizes the need for a clear distinction between "electron delocalization" and "spin delocalization" in annulated radicals. Aside from their relevance for the rational design of new antitumor drugs, the conceptional insights presented here also will inform the understanding of ferromagnetic materials, of spin-based signaling processes, and of spin topologies in metalloenzymes.

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Year:  2008        PMID: 18494451      PMCID: PMC3311918          DOI: 10.1021/jp8011987

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  32 in total

Review 1.  Quantum chemical studies of intermediates and reaction pathways in selected enzymes and catalytic synthetic systems.

Authors:  Louis Noodleman; Timothy Lovell; Wen-Ge Han; Jian Li; Fahmi Himo
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

2.  Sulfur K-edge XAS and DFT calculations on [Fe4S4]2+ clusters: effects of H-bonding and structural distortion on covalency and spin topology.

Authors:  Abhishek Dey; Cara L Roche; Marc A Walters; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Inorg Chem       Date:  2005-11-14       Impact factor: 5.165

3.  Describing static correlation in bond dissociation by Kohn-Sham density functional theory.

Authors:  M Fuchs; Y-M Niquet; X Gonze; K Burke
Journal:  J Chem Phys       Date:  2005-03-01       Impact factor: 3.488

4.  1,3-Alternate calix[4]arene nitronyl nitroxide tetraradical and diradical: synthesis, X-ray crystallography, paramagnetic NMR spectroscopy, EPR spectroscopy, and magnetic studies.

Authors:  Andrzej Rajca; Maren Pink; Sumit Mukherjee; Suchada Rajca; Kausik Das
Journal:  Tetrahedron       Date:  2007-10-29       Impact factor: 2.457

Review 5.  The role of hypoxia-activated prodrugs in cancer therapy.

Authors:  W A Denny
Journal:  Lancet Oncol       Date:  2000-09       Impact factor: 41.316

6.  Mitochondrial dysfunction after aerobic exposure to the hypoxic cytotoxin tirapazamine.

Authors:  B G Wouters; Y M Delahoussaye; J W Evans; G W Birrell; M J Dorie; J Wang; D MacDermed; R K Chiu; J M Brown
Journal:  Cancer Res       Date:  2001-01-01       Impact factor: 12.701

7.  Stabilities and Spin Distributions of Benzannulated Benzyl Radicals.

Authors:  Yongqiang Sui; Rainer Glaser; Ujjal Sarkar; Kent Gates
Journal:  J Chem Theory Comput       Date:  2007-05       Impact factor: 6.006

Review 8.  Tirapazamine: from bench to clinical trials.

Authors:  Loredana Marcu; Ian Olver
Journal:  Curr Clin Pharmacol       Date:  2006-01

9.  Mechanism of the antibiotic action pyocyanine.

Authors:  H M Hassan; I Fridovich
Journal:  J Bacteriol       Date:  1980-01       Impact factor: 3.490

10.  Direct evidence for bimodal DNA damage induced by tirapazamine.

Authors:  J S Daniels; K S Gates; C Tronche; M M Greenberg
Journal:  Chem Res Toxicol       Date:  1998-11       Impact factor: 3.739

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