Literature DB >> 18493640

Photocrosslinkers illuminate interactions in living cells.

Yoshihito Tanaka1, Michelle R Bond, Jennifer J Kohler.   

Abstract

Transient and low-affinity interactions among macromolecules underlie many physiological events. Often, these interactions are difficult to study because they are not maintained when the participating molecules are removed from their cellular context. To circumvent this challenge, crosslinking reagents can be used to introduce covalent bonds between interacting macromolecules. Photoactivatable crosslinkers are particularly attractive because they allow crosslinking to proceed in time- and location-specific ways. Once the interacting partners have been crosslinked, they can be isolated and then analyzed by mass spectrometry or other analytical techniques to determine the identity of the interacting molecules and to pinpoint the interacting regions. This review highlights recent methodological developments that make it possible to introduce photocrosslinking groups into polypeptides or glycans as they are synthesized in cells. We also describe how these methods offer a non-invasive way to study macromolecular interactions in a native context.

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Year:  2008        PMID: 18493640     DOI: 10.1039/b803218a

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  56 in total

1.  Metabolic labeling enables selective photocrosslinking of O-GlcNAc-modified proteins to their binding partners.

Authors:  Seok-Ho Yu; Michael Boyce; Amberlyn M Wands; Michelle R Bond; Carolyn R Bertozzi; Jennifer J Kohler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

2.  Complementary interactions of the rod PDE6 inhibitory subunit with the catalytic subunits and transducin.

Authors:  Lian-Wang Guo; Abdol R Hajipour; Arnold E Ruoho
Journal:  J Biol Chem       Date:  2010-03-15       Impact factor: 5.157

3.  Metabolism of diazirine-modified N-acetylmannosamine analogues to photo-cross-linking sialosides.

Authors:  Michelle R Bond; Haochi Zhang; Jaekuk Kim; Seok-Ho Yu; Fan Yang; Steven M Patrie; Jennifer J Kohler
Journal:  Bioconjug Chem       Date:  2011-08-25       Impact factor: 4.774

Review 4.  Fine-tuning multiprotein complexes using small molecules.

Authors:  Andrea D Thompson; Amanda Dugan; Jason E Gestwicki; Anna K Mapp
Journal:  ACS Chem Biol       Date:  2012-07-23       Impact factor: 5.100

5.  An engineered aryl azide ligase for site-specific mapping of protein-protein interactions through photo-cross-linking.

Authors:  Hemanta Baruah; Sujiet Puthenveetil; Yoon-Aa Choi; Samit Shah; Alice Y Ting
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

6.  Photocross-Linked Peptide-Protein Complexes Analysis: A Comparative Study of CID and ETD Fragmentation Modes.

Authors:  Séverine Clavier; Gérard Bolbach; Emmanuelle Sachon
Journal:  J Am Soc Mass Spectrom       Date:  2015-04-04       Impact factor: 3.109

7.  Photoaffinity probes for studying carbohydrate biology.

Authors:  Seok-Ho Yu; Amberlyn M Wands; Jennifer J Kohler
Journal:  J Carbohydr Chem       Date:  2012-07-02       Impact factor: 1.667

8.  Two-component covalent inhibitor.

Authors:  Evan M Cornett; Yulia V Gerasimova; Dmitry M Kolpashchikov
Journal:  Bioorg Med Chem       Date:  2013-01-22       Impact factor: 3.641

9.  A comparative study of ATP analogs for phosphorylation-dependent kinase-substrate crosslinking.

Authors:  Satish Garre; Chamara Senevirathne; Mary Kay H Pflum
Journal:  Bioorg Med Chem       Date:  2014-01-30       Impact factor: 3.641

10.  Exploring the interactions between signal sequences and E. coli SRP by two distinct and complementary crosslinking methods.

Authors:  Eugenia M Clérico; Aneta Szymańska; Lila M Gierasch
Journal:  Biopolymers       Date:  2009       Impact factor: 2.505

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