Literature DB >> 18491897

Pyridine ligand rotation in self-assembled trigonal prisms. Evidence for intracage solvent vapor bubbles.

Jaroslav Vacek1, Douglas C Caskey, Dominik Horinek, Richard K Shoemaker, Peter J Stang, Josef Michl.   

Abstract

The rate of interconversion of the two inequivalent edges of the pyridine rings in the trigonal prism 3c, self-assembled from 3 equiv of the star connector, tetrakis[4-(4-pyridylethynyl)phenyl]cyclobutadienecyclopentadienylcobalt, and 6 equiv of a platinum linker, cis-(Me3P)2Pt(2+) 2 TfO(-), was determined by DNMR in nitromethane. It exhibits a highly unusual bilinear Eyring plot. In the low temperature regime, the activation enthalpy DeltaH(double dagger) is approximately 12 kcal/mol and an activation entropy DeltaS(double dagger) ranges from approximately -15 to approximately 0 cal/mol x K as a function of the nature and concentration of the anions present. The reaction is attributed to hindered rotation of the pyridine rings about the Pt-N bond, facilitated by a tight pairing with a counterion. Above a counterion-dependent limiting temperature, DeltaH(double dagger) and DeltaS(double dagger) change abruptly to approximately 35 kcal/mol and approximately 60 cal/mol x K, respectively. The changes largely compensate, such that the reactions have comparable rates in the two regimes, both amenable to DNMR measurement, but their mechanisms clearly differ. Several kinetic models for the involvement of ion pairing equilibria fit the observed data nearly equally well, and they all contain a reaction step with high DeltaH(double dagger) and DeltaS(double dagger) values in the high-temperature regime. Its mechanism is proposed to involve a counterion-assisted reversible dissociation of one or two adjacent Pt-N bonds, followed by nearly free rotation of the terminal pyridine ring or rings and subsequent bond reclosure, which is similar to the last presumed step in the initial prism assembly. An interpretation of the very high DeltaS(double dagger) value is suggested by molecular dynamics calculations: at equilibrium, there is a bubble of gaseous nitromethane solvent inside the prism, and it collapses when the prism opens as the transition state is reached. A simple calculation of the entropy of cavitation provides quantitative support for this tentative proposal. The presence of such voids might be generally important for the formation and properties of self-assembled cages.

Entities:  

Year:  2008        PMID: 18491897     DOI: 10.1021/ja801341m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

Review 1.  Supramolecular coordination: self-assembly of finite two- and three-dimensional ensembles.

Authors:  Rajesh Chakrabarty; Partha Sarathi Mukherjee; Peter J Stang
Journal:  Chem Rev       Date:  2011-08-24       Impact factor: 60.622

2.  Coordination-driven self-assembly of M3L2 trigonal cages from preorganized metalloligands incorporating octahedral metal centers and fluorescent detection of nitroaromatics.

Authors:  Ming Wang; Vaishali Vajpayee; Sankarasekaran Shanmugaraju; Yao-Rong Zheng; Zhigang Zhao; Hyunuk Kim; Partha Sarathi Mukherjee; Ki-Whan Chi; Peter J Stang
Journal:  Inorg Chem       Date:  2011-01-07       Impact factor: 5.165

3.  Metallosupramolecular tetragonal prisms via multicomponent coordination-driven template-free self-assembly.

Authors:  Ming Wang; Yao-Rong Zheng; Koushik Ghosh; Peter J Stang
Journal:  J Am Chem Soc       Date:  2010-05-12       Impact factor: 15.419

4.  Carbon-rich supramolecular metallacycles and metallacages.

Authors:  Brian H Northrop; Dennis Chercka; Peter J Stang
Journal:  Tetrahedron       Date:  2008-12-08       Impact factor: 2.457

5.  Construction of endo-functionalized two dimensional metallacycles via coordination-driven self-assembly.

Authors:  Liang Zhao; Koushik Ghosh; Yao-Rong Zheng; Peter J Stang
Journal:  J Org Chem       Date:  2009-11-20       Impact factor: 4.354

6.  Self-selection in the self-assembly of isomeric supramolecular squares from unsymmetrical bis(4-pyridyl)acetylene ligands.

Authors:  Liang Zhao; Brian H Northrop; Yao-Rong Zheng; Hai-Bo Yang; Hyo Jin Lee; Young Min Lee; Joo Yeon Park; Ki-Whan Chi; Peter J Stang
Journal:  J Org Chem       Date:  2008-08-07       Impact factor: 4.354

7.  From solvolysis to self-assembly.

Authors:  Peter J Stang
Journal:  J Org Chem       Date:  2009-01-02       Impact factor: 4.354

8.  Assembling Pentatopic Terpyridine Ligands with Three Types of Coordination Moieties into a Giant Supramolecular Hexagonal Prism: Synthesis, Self-Assembly, Characterization, and Antimicrobial Study.

Authors:  Heng Wang; Chung-Hao Liu; Kun Wang; Minghui Wang; Hao Yu; Sneha Kandapal; Robert Brzozowski; Bingqian Xu; Ming Wang; Shuai Lu; Xin-Qi Hao; Prahathees Eswara; Mu-Ping Nieh; Jianfeng Cai; Xiaopeng Li
Journal:  J Am Chem Soc       Date:  2019-09-25       Impact factor: 15.419

9.  Direct and quantitative characterization of dynamic ligand exchange between coordination-driven self-assembled supramolecular polygons.

Authors:  Yao-Rong Zheng; Peter J Stang
Journal:  J Am Chem Soc       Date:  2009-03-18       Impact factor: 15.419

10.  Self-assembly of a triangle-shaped, hexaplatinum-incorporated, supramolecular amphiphile in solution and at interfaces.

Authors:  Umamageswaran Maran; David Britt; Christopher B Fox; Joel M Harris; Anita M Orendt; Hiram Conley; Robert Davis; Vladamir Hlady; Peter J Stang
Journal:  Chemistry       Date:  2009-08-24       Impact factor: 5.020

  10 in total

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