Literature DB >> 18485767

Molecular potential energies in dodecahedron cell of methane hydrate and dispersion correction for DFT.

Qi-Shi Du1, Da-Peng Li, Peng-Jun Liu, Ri-Bo Huang.   

Abstract

The interaction potential energies of water-water and water-methane in structure-I unit cell of methane hydrate are calculated from 2.1 to 8.0A using density functional theory (DFT) B3LYP/TZVP. The curves of potential energies are corrected for basis set superposition error (BSSE) and dispersion interaction using a 4-term L-J (4,6-8,12) correction equation, which is derived from CCSD(T)/cc-pVTZ calculations of water-water and water-methane molecular pairs, using least squares curve-fitting. The methane hydrate unit cell is a regular water dodecahedron cell consisting of 20 water molecules with a methane molecule in the center. The geometries of water and methane are optimized at CCSD(T)/cc-pVTZ level. The BSSE-corrections are calculated for water-water and water-methane interaction energies as functions of the side length, l, of the dodecahedron cell at B3LYP/TZVP level in the range from 2.1 to 8.0A. The BSSE CP-corrected and dispersion-corrected potential energy surfaces (PES) of water-water and water-methane are useful for molecular dynamics simulation of gas clathrate-hydrates.

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Year:  2008        PMID: 18485767     DOI: 10.1016/j.jmgm.2008.03.008

Source DB:  PubMed          Journal:  J Mol Graph Model        ISSN: 1093-3263            Impact factor:   2.518


  3 in total

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Journal:  J Mol Model       Date:  2014-03-16       Impact factor: 1.810

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Authors:  Anjali Gupta; Jan K Marzinek; Damien Jefferies; Peter J Bond; Pia Harryson; Thorsten Wohland
Journal:  J Biol Chem       Date:  2019-02-28       Impact factor: 5.157

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Authors:  Si-Ming Liao; Qi-Shi Du; Jian-Zong Meng; Zong-Wen Pang; Ri-Bo Huang
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  3 in total

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