Literature DB >> 18481991

Alternative splicing in plants.

Craig G Simpson1, Dominika Lewandowska, John Fuller, Monika Maronova, Maria Kalyna, Diane Davidson, Jim McNicol, Dorota Raczynska, Artur Jarmolowski, Andrea Barta, John W S Brown.   

Abstract

The impact of AS (alternative splicing) is well-recognized in animal systems as a key regulator of gene expression and proteome complexity. In plants, AS is of growing importance as more genes are found to undergo AS, but relatively little is known about the factors regulating AS or the consequences of AS on mRNA levels and protein function. We have established an accurate and reproducible RT (reverse transcription)-PCR system to analyse AS in multiple genes. Initial studies have identified new AS events confirming that current values for the frequency of AS in plants are likely to be underestimates.

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Year:  2008        PMID: 18481991     DOI: 10.1042/BST0360508

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  10 in total

1.  Intron retention and 3'-UTR analysis of Arabidopsis Dicer-like 2 transcripts.

Authors:  Qiongji He; Jiejun Peng; Fei Yan; Lin Lin; Yuwen Lu; Hongying Zheng; Hairu Chen; Jianping Chen
Journal:  Mol Biol Rep       Date:  2011-06-23       Impact factor: 2.316

2.  Expression analysis of a heat-inducible, Myo-inositol-1-phosphate synthase (MIPS) gene from wheat and the alternatively spliced variants of rice and Arabidopsis.

Authors:  Neetika Khurana; Harsh Chauhan; Paramjit Khurana
Journal:  Plant Cell Rep       Date:  2011-10-05       Impact factor: 4.570

3.  Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.

Authors:  Yamile Marquez; John W S Brown; Craig Simpson; Andrea Barta; Maria Kalyna
Journal:  Genome Res       Date:  2012-03-05       Impact factor: 9.043

4.  Identification and analysis of alternative splicing events in Phaseolus vulgaris and Glycine max.

Authors:  Luis P Iñiguez; Mario Ramírez; William B Barbazuk; Georgina Hernández
Journal:  BMC Genomics       Date:  2017-08-22       Impact factor: 3.969

5.  Identified of a novel cis-element regulating the alternative splicing of LcDREB2.

Authors:  Zhujiang Liu; Guangxiao Yuan; Shu Liu; Junting Jia; Liqin Cheng; Dongmei Qi; Shihua Shen; Xianjun Peng; Gongshe Liu
Journal:  Sci Rep       Date:  2017-04-06       Impact factor: 4.379

6.  Transcriptomics and Alternative Splicing Analyses Reveal Large Differences between Maize Lines B73 and Mo17 in Response to Aphid Rhopalosiphum padi Infestation.

Authors:  Juan Song; Hui Liu; Huifu Zhuang; Chunxia Zhao; Yuxing Xu; Shibo Wu; Jinfeng Qi; Jing Li; Christian Hettenhausen; Jianqiang Wu
Journal:  Front Plant Sci       Date:  2017-10-10       Impact factor: 5.753

7.  Genome-wide alternative splicing landscapes modulated by biotrophic sugarcane smut pathogen.

Authors:  Renesh Bedre; Sonia Irigoyen; Patricia D C Schaker; Claudia B Monteiro-Vitorello; Jorge A Da Silva; Kranthi K Mandadi
Journal:  Sci Rep       Date:  2019-06-20       Impact factor: 4.379

8.  Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.

Authors:  Katarzyna Dorota Raczynska; Craig G Simpson; Adam Ciesiolka; Lukasz Szewc; Dominika Lewandowska; Jim McNicol; Zofia Szweykowska-Kulinska; John W S Brown; Artur Jarmolowski
Journal:  Nucleic Acids Res       Date:  2009-10-28       Impact factor: 16.971

9.  The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana.

Authors:  Katarzyna Dorota Raczynska; Agata Stepien; Daniel Kierzkowski; Malgorzata Kalak; Mateusz Bajczyk; Jim McNicol; Craig G Simpson; Zofia Szweykowska-Kulinska; John W S Brown; Artur Jarmolowski
Journal:  Nucleic Acids Res       Date:  2013-10-16       Impact factor: 16.971

10.  Transcriptome Profiling Revealed Stress-Induced and Disease Resistance Genes Up-Regulated in PRSV Resistant Transgenic Papaya.

Authors:  Jingping Fang; Aiting Lin; Weijing Qiu; Hanyang Cai; Muhammad Umar; Rukai Chen; Ray Ming
Journal:  Front Plant Sci       Date:  2016-06-16       Impact factor: 5.753

  10 in total

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