Literature DB >> 18479058

[Bacterial and archaeal diversity in surface sediment from the south slope of the South China Sea].

Tao Li1, Peng Wang, Pinxian Wang.   

Abstract

Diversity of bacteria and archaea was studied in deep marine sediments by PCR amplification and sequence analysis of 16S rDNA. Sample analysed was from IMAGES (International Marine Past Global Change Study) 147 at site of the south slope of the South China Sea. DNA was amplified from samples at the surface layer of core MD05-2896. Phylogenetic analysis of clone libraries showed a wide variety of uncultured bacteria and archeae. The most abundant bacterial sequences (phylotypes) corresponded to the Proteobacteria, followed by the Planctomycete, Acidobacteria and candidate division OP10. Phylotypes ascribing to Deferrobacteres, Verrucomicrobia, Spirochaetes and candidate division clades of OP3, OP11, OP8 and TM6 were also identified. Archaeal 16S rDNA sequences were within phylums of Crenarchaeota and Euryarchaeota, respectively. The majority of archaeal phylotypes were Marine Benthic Group B (MBGB), Marine Crenarchaeotic Group I (MG I), Marine Benthic Group D (MBGD) and South African Gold Mine Euryarchaeotic Group (SAGMEG). Additional sequences grouped with the C3, Methanobacteriales and Novel Euryarchaeotic Group (NEG). These results indicate that bacteria and archaea are abundant and diversified in surface environment of subseafloor sediments.

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Year:  2008        PMID: 18479058

Source DB:  PubMed          Journal:  Wei Sheng Wu Xue Bao        ISSN: 0001-6209


  5 in total

1.  A global network of coexisting microbes from environmental and whole-genome sequence data.

Authors:  Samuel Chaffron; Hubert Rehrauer; Jakob Pernthaler; Christian von Mering
Journal:  Genome Res       Date:  2010-05-10       Impact factor: 9.043

2.  Community structure of archaea from deep-sea sediments of the South China Sea.

Authors:  Peng Wang; Tao Li; Anyi Hu; Yuli Wei; Wenting Guo; Nianzhi Jiao; Chuanlun Zhang
Journal:  Microb Ecol       Date:  2010-10-01       Impact factor: 4.552

3.  Bacterial and archaeal communities in the surface sediment from the northern slope of the South China Sea.

Authors:  Li Liao; Xue-wei Xu; Chun-sheng Wang; Dong-sheng Zhang; Min Wu
Journal:  J Zhejiang Univ Sci B       Date:  2009-12       Impact factor: 3.066

4.  Trophic strategy of diverse methanogens across a river-to-sea gradient.

Authors:  Bingchen Wang; Fanghua Liu; Shiling Zheng; Qinqin Hao
Journal:  J Microbiol       Date:  2019-05-27       Impact factor: 3.422

5.  Richness and diversity of bacteria in the Nansha carbonate platform (Core MD05-2896), South China Sea.

Authors:  Tao Li; Peng Wang
Journal:  World J Microbiol Biotechnol       Date:  2013-05-23       Impact factor: 3.312

  5 in total

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