Literature DB >> 18478586

Improvement in molecule exchange efficiency in Gibbs ensemble Monte Carlo: development and implementation of the continuous fractional component move.

Wei Shi1, Edward J Maginn.   

Abstract

The continuous fractional component Monte Carlo (CFC MC) move (J Chem Theory Comput, 2007, 3, 1451) is extended to the Gibbs ensemble. The algorithm is validated against conventional simulations for the Lennard Jones fluid and a flexible water model. The method is also used to compute the vapor-liquid coexistence densities of a model for SO(2). The CFC molecule exchange move relies on the gradual insertion and deletion of molecules in conjunction with a self-adapting bias potential. As a result, the method does not require the formation of spontaneous voids in the dense fluid phase to be successful, leading to molecule exchange acceptance probabilities that are nearly independent of temperature. For example, over 1% of the vapor-liquid molecule exchange moves are successful for water at 280 K, whereas advanced rotational and configurational bias methods have success rates of less than 0.03%. The CFC move can be combined with other Monte Carlo moves to enable efficient simulation of dense strongly associating fluids that are to this point infeasible to model with standard methods. Copyright 2008 Wiley Periodicals, Inc.

Entities:  

Year:  2008        PMID: 18478586     DOI: 10.1002/jcc.20977

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  9 in total

1.  Comparing Alchemical Free Energy Estimates to Experimental Values Based on the Ben-Naim Formula: How Much Agreement Can We Expect?

Authors:  T Ryan Rogers; Feng Wang
Journal:  J Phys Chem B       Date:  2020-01-23       Impact factor: 2.991

2.  Effect of Water Content on Thermodynamic Properties of Compressed Hydrogen.

Authors:  Ahmadreza Rahbari; Julio C Garcia-Navarro; Mahinder Ramdin; Leo J P van den Broeke; Othonas A Moultos; David Dubbeldam; Thijs J H Vlugt
Journal:  J Chem Eng Data       Date:  2021-04-09       Impact factor: 2.694

3.  Efficient Application of Continuous Fractional Component Monte Carlo in the Reaction Ensemble.

Authors:  Ali Poursaeidesfahani; Remco Hens; Ahmadreza Rahbari; Mahinder Ramdin; David Dubbeldam; Thijs J H Vlugt
Journal:  J Chem Theory Comput       Date:  2017-08-07       Impact factor: 6.006

4.  Behavior of the Enthalpy of Adsorption in Nanoporous Materials Close to Saturation Conditions.

Authors:  Ariana Torres-Knoop; Ali Poursaeidesfahani; Thijs J H Vlugt; David Dubbeldam
Journal:  J Chem Theory Comput       Date:  2017-06-09       Impact factor: 6.006

5.  Multiple Free Energy Calculations from Single State Point Continuous Fractional Component Monte Carlo Simulation Using Umbrella Sampling.

Authors:  Ahmadreza Rahbari; Remco Hens; Othonas A Moultos; David Dubbeldam; Thijs J H Vlugt
Journal:  J Chem Theory Comput       Date:  2020-02-12       Impact factor: 6.006

6.  Solubility of Carbon Dioxide, Hydrogen Sulfide, Methane, and Nitrogen in Monoethylene Glycol; Experiments and Molecular Simulation.

Authors:  Noura Dawass; Ricardo R Wanderley; Mahinder Ramdin; Othonas A Moultos; Hanna K Knuutila; Thijs J H Vlugt
Journal:  J Chem Eng Data       Date:  2020-12-03       Impact factor: 2.694

7.  Simu-D: A Simulator-Descriptor Suite for Polymer-Based Systems under Extreme Conditions.

Authors:  Miguel Herranz; Daniel Martínez-Fernández; Pablo Miguel Ramos; Katerina Foteinopoulou; Nikos Ch Karayiannis; Manuel Laso
Journal:  Int J Mol Sci       Date:  2021-11-18       Impact factor: 5.923

8.  Solubilities and Transport Properties of CO2, Oxalic Acid, and Formic Acid in Mixed Solvents Composed of Deep Eutectic Solvents, Methanol, and Propylene Carbonate.

Authors:  Noura Dawass; Jilles Langeveld; Mahinder Ramdin; Elena Pérez-Gallent; Angel A Villanueva; Erwin J M Giling; Jort Langerak; Leo J P van den Broeke; Thijs J H Vlugt; Othonas A Moultos
Journal:  J Phys Chem B       Date:  2022-05-04       Impact factor: 3.466

9.  Molecular Simulation of Vapor-Liquid Equilibria Using the Wolf Method for Electrostatic Interactions.

Authors:  Remco Hens; Thijs J H Vlugt
Journal:  J Chem Eng Data       Date:  2017-12-13       Impact factor: 2.694

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.