Literature DB >> 18476736

Growth inhibition mechanism of an ice-water interface by a mutant of winter flounder antifreeze protein: a molecular dynamics study.

Hiroki Nada1, Yoshinori Furukawa.   

Abstract

Molecular dynamics (MD) simulations of a growing ice-water interface of a pyramidal {2021} plane in the presence of a mutant of winter flounder antifreeze protein (AFP) were conducted. Simulation results indicated that the AFP was partially surrounded by ice grown at the pyramidal interface. The AFP stably bound to the interface only when AFP hydrophobic residues bound to ice. Simulation results also indicated a drastic decrease in the growth velocity of the ice surrounding the stably bound AFP, in agreement with ice growth inhibition processes that have been observed in real systems. We confirmed that the decrease in the growth velocity of ice was attributable to the melting point depression caused by the Gibbs-Thomson effect. Simulation results suggested that the growth of ice surrounding the AFP is needed to promote stable AFP binding to the interface and subsequent ice growth inhibition. MD simulations of a growing ice-water interface of a prismatic {10_10} plane were also conducted. Neither the stable binding of the AFP to the interface nor the decrease in the growth velocity occurred for the prismatic plane. These results agree with the fact that AFPs inhibit the growth of ice only on the pyramidal planes in real systems.

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Year:  2008        PMID: 18476736     DOI: 10.1021/jp711977g

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  7 in total

1.  Crystal-plane-dependent effects of antifreeze glycoprotein impurity for ice growth dynamics.

Authors:  Yoshinori Furukawa; Ken Nagashima; Shunichi Nakatsubo; Salvador Zepeda; Ken-Ichiro Murata; Gen Sazaki
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2019-06-03       Impact factor: 4.226

2.  The biological function of an insect antifreeze protein simulated by molecular dynamics.

Authors:  Michael J Kuiper; Craig J Morton; Sneha E Abraham; Angus Gray-Weale
Journal:  Elife       Date:  2015-05-07       Impact factor: 8.140

3.  Oscillations and accelerations of ice crystal growth rates in microgravity in presence of antifreeze glycoprotein impurity in supercooled water.

Authors:  Yoshinori Furukawa; Ken Nagashima; Shun-Ichi Nakatsubo; Izumi Yoshizaki; Haruka Tamaru; Taro Shimaoka; Takehiko Sone; Etsuro Yokoyama; Salvador Zepeda; Takanori Terasawa; Harutoshi Asakawa; Ken-Ichiro Murata; Gen Sazaki
Journal:  Sci Rep       Date:  2017-03-06       Impact factor: 4.379

4.  Structures, dynamics, and hydrogen-bond interactions of antifreeze proteins in TIP4P/Ice water and their dependence on force fields.

Authors:  Hwankyu Lee
Journal:  PLoS One       Date:  2018-06-07       Impact factor: 3.240

5.  Anisotropy in Stable Conformations of Hydroxylate Ions between the {001} and {110} Planes of TiO2 Rutile Crystals for Glycolate, Lactate, and 2-Hydroxybutyrate Ions Studied by Metadynamics Method.

Authors:  Hiroki Nada; Makoto Kobayashi; Masato Kakihana
Journal:  ACS Omega       Date:  2019-06-25

6.  Ice-Binding Proteins in a Chrysophycean Snow Alga: Acquisition of an Essential Gene by Horizontal Gene Transfer.

Authors:  James A Raymond; Daniel Remias
Journal:  Front Microbiol       Date:  2019-11-28       Impact factor: 5.640

7.  Ice Recrystallization Inhibition by Amino Acids: The Curious Case of Alpha- and Beta-Alanine.

Authors:  Matthew T Warren; Iain Galpin; Fabienne Bachtiger; Matthew I Gibson; Gabriele C Sosso
Journal:  J Phys Chem Lett       Date:  2022-03-03       Impact factor: 6.888

  7 in total

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