Literature DB >> 1847513

Transposon-facilitated DNA sequencing.

M Strathmann1, B A Hamilton, C A Mayeda, M I Simon, E M Meyerowitz, M J Palazzolo.   

Abstract

We describe here a transposon-based DNA sequencing strategy that allows the introduction of sequencing priming sites throughout a target sequence by bacterial mating. A miniplasmid was designed to select against transposon insertions into the vector. Sites of transposon insertion are mapped by the polymerase chain reaction with bacterial overnight cultures providing the templates. A small set of plasmids with transposons spaced several hundred base pairs apart can then be sequenced. Sequencing primers corresponding to the transposon ends allow sequencing in both directions. Thus, the entire sequence of both strands can be easily determined.

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Year:  1991        PMID: 1847513      PMCID: PMC50994          DOI: 10.1073/pnas.88.4.1247

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Rapid sequencing of cloned DNA using a transposon for bidirectional priming: sequence of the Escherichia coli K-12 avtA gene.

Authors:  L Liu; W Whalen; A Das; C M Berg
Journal:  Nucleic Acids Res       Date:  1987-11-25       Impact factor: 16.971

2.  Bidirectional chain-termination nucleotide sequencing: transposon Tn5seq1 as a mobile source of primer sites.

Authors:  D K Nag; H V Huang; D E Berg
Journal:  Gene       Date:  1988-04-15       Impact factor: 3.688

3.  Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia.

Authors:  R K Saiki; S Scharf; F Faloona; K B Mullis; G T Horn; H A Erlich; N Arnheim
Journal:  Science       Date:  1985-12-20       Impact factor: 47.728

4.  A rapid procedure for DNA sequencing using transposon-promoted deletions in Escherichia coli.

Authors:  A Ahmed
Journal:  Gene       Date:  1985       Impact factor: 3.688

5.  Specific-primer-directed DNA sequencing.

Authors:  E C Strauss; J A Kobori; G Siu; L E Hood
Journal:  Anal Biochem       Date:  1986-04       Impact factor: 3.365

6.  DNA sequence of the E. coli gyrB gene: application of a new sequencing strategy.

Authors:  T Adachi; M Mizuuchi; E A Robinson; E Appella; M H O'Dea; M Gellert; K Mizuuchi
Journal:  Nucleic Acids Res       Date:  1987-01-26       Impact factor: 16.971

7.  Use of a new strategy to isolate and characterize 436 Drosophila cDNA clones corresponding to RNAs detected in adult heads but not in early embryos.

Authors:  M J Palazzolo; D R Hyde; K VijayRaghavan; K Mecklenburg; S Benzer; E Meyerowitz
Journal:  Neuron       Date:  1989-10       Impact factor: 17.173

8.  Uses of the transposon gamma delta in the analysis of cloned genes.

Authors:  M S Guyer
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

9.  The gamma delta sequence of F is an insertion sequence.

Authors:  M S Guyer
Journal:  J Mol Biol       Date:  1978-12-15       Impact factor: 5.469

10.  Probe mapping to facilitate transposon-based DNA sequencing.

Authors:  L D Strausbaugh; M T Bourke; M T Sommer; M E Coon; C M Berg
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

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  75 in total

1.  Organization of the biosynthetic gene cluster for the polyketide anthelmintic macrolide avermectin in Streptomyces avermitilis.

Authors:  H Ikeda; T Nonomiya; M Usami; T Ohta; S Omura
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Characterization and heterologous expression of laccase cDNAs from xylem tissues of yellow-poplar (Liriodendron tulipifera).

Authors:  P R LaFayette; K E Eriksson; J F Dean
Journal:  Plant Mol Biol       Date:  1999-05       Impact factor: 4.076

3.  Gene organization of the dnaA region of Wolbachia.

Authors:  L V Sun; A Babaratsas; C Savakis; S L O'Neill; K Bourtzis
Journal:  J Bacteriol       Date:  1999-08       Impact factor: 3.490

4.  Colinearity and its exceptions in orthologous adh regions of maize and sorghum.

Authors:  A P Tikhonov; P J SanMiguel; Y Nakajima; N M Gorenstein; J L Bennetzen; Z Avramova
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

5.  The oxen gene of Drosophila encodes a homolog of subunit 9 of yeast ubiquinol-cytochrome c oxidoreductase complex: evidence for modulation of gene expression in response to mitochondrial activity.

Authors:  M V Frolov; E V Benevolenskaya; J A Birchler
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

6.  An efficient strategy for large-scale high-throughput transposon-mediated sequencing of cDNA clones.

Authors:  Yaron S N Butterfield; Marco A Marra; Jennifer K Asano; Susanna Y Chan; Ranabir Guin; Martin I Krzywinski; Soo Sen Lee; Kim W K MacDonald; Carrie A Mathewson; Teika E Olson; Pawan K Pandoh; Anna-Liisa Prabhu; Angelique Schnerch; Ursula Skalska; Duane E Smailus; Jeff M Stott; Miranda I Tsai; George S Yang; Scott D Zuyderduyn; Jacqueline E Schein; Steven J M Jones
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

7.  Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize.

Authors:  Xiangqin Cui; An-Ping Hsia; Feng Liu; Daniel A Ashlock; Roger P Wise; Patrick S Schnable
Journal:  Genetics       Date:  2003-02       Impact factor: 4.562

8.  Synergy between suppressor of Hairless and Notch in regulation of Enhancer of split m gamma and m delta expression.

Authors:  D S Eastman; R Slee; E Skoufos; L Bangalore; S Bray; C Delidakis
Journal:  Mol Cell Biol       Date:  1997-09       Impact factor: 4.272

9.  Comparative genomic analysis in the region of a major Plasmodium-refractoriness locus of Anopheles gambiae.

Authors:  Dana Thomasova; Lucas Q Ton; Richard R Copley; Evgeny M Zdobnov; Xuelan Wang; Young S Hong; Cheolho Sim; Peer Bork; Fotis C Kafatos; Frank H Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

10.  Diverse transposable elements are mobilized in hybrid dysgenesis in Drosophila virilis.

Authors:  D A Petrov; J L Schutzman; D L Hartl; E R Lozovskaya
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-15       Impact factor: 11.205

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