Literature DB >> 18474041

Resolving the network of cell signaling pathways using the evolving yeast two-hybrid system.

Vladimir Ratushny1, Erica Golemis.   

Abstract

In 1983, while investigators had identified a few human proteins as important regulators of specific biological outcomes, how these proteins acted in the cell was essentially unknown in almost all cases. Twenty-five years later, our knowledge of the mechanistic basis of protein action has been transformed by our increasingly detailed understanding of protein-protein interactions, which have allowed us to define cellular machines. The advent of the yeast two-hybrid (Y2H) system in 1989 marked a milestone in the field of proteomics. Exploiting the modular nature of transcription factors, the Y2H system allows facile measurement of the activation of reporter genes based on interactions between two chimeric or "hybrid" proteins of interest. After a decade of service as a leading platform for individual investigators to use in exploring the interaction properties of interesting target proteins, the Y2H system has increasingly been applied in high-throughput applications intended to map genome-scale protein-protein interactions for model organisms and humans. Although some significant technical limitations apply, Y2H has made a great contribution to our general understanding of the topology of cellular signaling networks.

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Year:  2008        PMID: 18474041      PMCID: PMC2526548          DOI: 10.2144/000112797

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  93 in total

Review 1.  Exploring complex networks.

Authors:  S H Strogatz
Journal:  Nature       Date:  2001-03-08       Impact factor: 49.962

2.  Two-hybrid dual bait system to discriminate specificity of protein interactions in small GTPases.

Authors:  I G Serebriiskii; O V Mitina; J Chernoff; E A Golemis
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

3.  Is there a bias in proteome research?

Authors:  R Mrowka; A Patzak; H Herzel
Journal:  Genome Res       Date:  2001-12       Impact factor: 9.043

4.  Lethality and centrality in protein networks.

Authors:  H Jeong; S P Mason; A L Barabási; Z N Oltvai
Journal:  Nature       Date:  2001-05-03       Impact factor: 49.962

5.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

6.  Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.

Authors:  Yuen Ho; Albrecht Gruhler; Adrian Heilbut; Gary D Bader; Lynda Moore; Sally-Lin Adams; Anna Millar; Paul Taylor; Keiryn Bennett; Kelly Boutilier; Lingyun Yang; Cheryl Wolting; Ian Donaldson; Søren Schandorff; Juanita Shewnarane; Mai Vo; Joanne Taggart; Marilyn Goudreault; Brenda Muskat; Cris Alfarano; Danielle Dewar; Zhen Lin; Katerina Michalickova; Andrew R Willems; Holly Sassi; Peter A Nielsen; Karina J Rasmussen; Jens R Andersen; Lene E Johansen; Lykke H Hansen; Hans Jespersen; Alexandre Podtelejnikov; Eva Nielsen; Janne Crawford; Vibeke Poulsen; Birgitte D Sørensen; Jesper Matthiesen; Ronald C Hendrickson; Frank Gleeson; Tony Pawson; Michael F Moran; Daniel Durocher; Matthias Mann; Christopher W V Hogue; Daniel Figeys; Mike Tyers
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

7.  MIPS: a database for genomes and protein sequences.

Authors:  H W Mewes; D Frishman; U Güldener; G Mannhaupt; K Mayer; M Mokrejs; B Morgenstern; M Münsterkötter; S Rudd; B Weil
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

8.  A physical map of the human genome.

Authors:  J D McPherson; M Marra; L Hillier; R H Waterston; A Chinwalla; J Wallis; M Sekhon; K Wylie; E R Mardis; R K Wilson; R Fulton; T A Kucaba; C Wagner-McPherson; W B Barbazuk; S G Gregory; S J Humphray; L French; R S Evans; G Bethel; A Whittaker; J L Holden; O T McCann; A Dunham; C Soderlund; C E Scott; D R Bentley; G Schuler; H C Chen; W Jang; E D Green; J R Idol; V V Maduro; K T Montgomery; E Lee; A Miller; S Emerling; R Gibbs; S Scherer; J H Gorrell; E Sodergren; K Clerc-Blankenburg; P Tabor; S Naylor; D Garcia; P J de Jong; J J Catanese; N Nowak; K Osoegawa; S Qin; L Rowen; A Madan; M Dors; L Hood; B Trask; C Friedman; H Massa; V G Cheung; I R Kirsch; T Reid; R Yonescu; J Weissenbach; T Bruls; R Heilig; E Branscomb; A Olsen; N Doggett; J F Cheng; T Hawkins; R M Myers; J Shang; L Ramirez; J Schmutz; O Velasquez; K Dixon; N E Stone; D R Cox; D Haussler; W J Kent; T Furey; S Rogic; S Kennedy; S Jones; A Rosenthal; G Wen; M Schilhabel; G Gloeckner; G Nyakatura; R Siebert; B Schlegelberger; J Korenberg; X N Chen; A Fujiyama; M Hattori; A Toyoda; T Yada; H S Park; Y Sakaki; N Shimizu; S Asakawa; K Kawasaki; T Sasaki; A Shintani; A Shimizu; K Shibuya; J Kudoh; S Minoshima; J Ramser; P Seranski; C Hoff; A Poustka; R Reinhardt; H Lehrach
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

9.  Systematic genetic analysis with ordered arrays of yeast deletion mutants.

Authors:  A H Tong; M Evangelista; A B Parsons; H Xu; G D Bader; N Pagé; M Robinson; S Raghibizadeh; C W Hogue; H Bussey; B Andrews; M Tyers; C Boone
Journal:  Science       Date:  2001-12-14       Impact factor: 47.728

10.  A comprehensive two-hybrid analysis to explore the yeast protein interactome.

Authors:  T Ito; T Chiba; R Ozawa; M Yoshida; M Hattori; Y Sakaki
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

View more
  9 in total

Review 1.  Tools used to study how protein complexes are assembled in signaling cascades.

Authors:  Susan Dwane; Patrick A Kiely
Journal:  Bioeng Bugs       Date:  2011-09-01

2.  Murine cytomegalovirus IE3 protein interacts with Ankrd17.

Authors:  Hui Wang; Xinglou Liu; Sainan Shu; Ju Zhang; Yongjian Huang; Feng Fang
Journal:  J Huazhong Univ Sci Technolog Med Sci       Date:  2011-06-14

3.  High speed digital protein interaction analysis using microfluidic single molecule detection system.

Authors:  Chao-Kai Chou; Nan Jing; Hirohito Yamaguchi; Pei-Hsiang Tsou; Heng-Huan Lee; Chun-Te Chen; Ying-Nai Wang; Sungmin Hong; Chin Su; Jun Kameoka; Mien-Chie Hung
Journal:  Lab Chip       Date:  2010-05-24       Impact factor: 6.799

4.  Anti-apoptotic Splicing Variant of AIMP2 Recover Mutant SOD1-Induced Neuronal Cell Death.

Authors:  Myung Geun Kook; Mi Ran Byun; Soo Min Lee; Min Hak Lee; Dae Hoon Lee; Hyung Been Lee; Eui-Jin Lee; Kyunghwa Baek; Sunghoon Kim; Kyung-Sun Kang; Jin Woo Choi
Journal:  Mol Neurobiol       Date:  2022-10-15       Impact factor: 5.682

Review 5.  Mechanisms of tumor resistance to EGFR-targeted therapies.

Authors:  Elizabeth A Hopper-Borge; Rochelle E Nasto; Vladimir Ratushny; Louis M Weiner; Erica A Golemis; Igor Astsaturov
Journal:  Expert Opin Ther Targets       Date:  2009-03       Impact factor: 6.902

6.  Protopia: a protein-protein interaction tool.

Authors:  Alejandro Real-Chicharro; Iván Ruiz-Mostazo; Ismael Navas-Delgado; Amine Kerzazi; Othmane Chniber; Francisca Sánchez-Jiménez; Miguel Angel Medina; José F Aldana-Montes
Journal:  BMC Bioinformatics       Date:  2009-10-15       Impact factor: 3.169

Review 7.  Investigation of stable and transient protein-protein interactions: Past, present, and future.

Authors:  Armand G Ngounou Wetie; Izabela Sokolowska; Alisa G Woods; Urmi Roy; Joseph A Loo; Costel C Darie
Journal:  Proteomics       Date:  2013-01-18       Impact factor: 3.984

8.  Searching for cellular partners of hantaviral nonstructural protein NSs: Y2H screening of mouse cDNA library and analysis of cellular interactome.

Authors:  Tuomas Rönnberg; Kirsi Jääskeläinen; Guillaume Blot; Ville Parviainen; Antti Vaheri; Risto Renkonen; Michele Bouloy; Alexander Plyusnin
Journal:  PLoS One       Date:  2012-04-10       Impact factor: 3.240

9.  A High-Throughput Candida albicans Two-Hybrid System.

Authors:  Floris Schoeters; Carol A Munro; Christophe d'Enfert; Patrick Van Dijck
Journal:  mSphere       Date:  2018-08-22       Impact factor: 4.389

  9 in total

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