Literature DB >> 18473189

Domain-specific data sharing in neuroscience: what do we have to learn from each other?

John Darrell Van Horn1, Catherine A Ball.   

Abstract

Molecular biology and genomics have made notable strides in the sharing of primary data and resources. In other domains of neuroscience research, however, there has been resistance to adopting formalized strategies for data exchange, archiving, and availability. In this article, we discuss how neuroscience domains might follow the lead of molecular biology on what has been successful and what has failed in active data sharing. This considers not only the technical challenges but also the sociological concerns in making it possible. Though, not a pain-free process, with increased data availability, scientists from multiple fields can enjoy greater opportunity for novel discoveries about the brain in health and disease.

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Mesh:

Year:  2008        PMID: 18473189      PMCID: PMC3319052          DOI: 10.1007/s12021-008-9019-9

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  39 in total

1.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors:  A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

3.  Functional brain imaging of young, nondemented, and demented older adults.

Authors:  R L Buckner; A Z Snyder; A L Sanders; M E Raichle; J C Morris
Journal:  J Cogn Neurosci       Date:  2000       Impact factor: 3.225

4.  Data sharing. DNA sequencer protests being scooped with his own data.

Authors:  Eliot Marshall
Journal:  Science       Date:  2002-02-15       Impact factor: 47.728

Review 5.  Microarrays: lost in a storm of data?

Authors:  M F Miles
Journal:  Nat Rev Neurosci       Date:  2001-06       Impact factor: 34.870

6.  The Protein Data Bank.

Authors:  Helen M Berman; Tammy Battistuz; T N Bhat; Wolfgang F Bluhm; Philip E Bourne; Kyle Burkhardt; Zukang Feng; Gary L Gilliland; Lisa Iype; Shri Jain; Phoebe Fagan; Jessica Marvin; David Padilla; Veerasamy Ravichandran; Bohdan Schneider; Narmada Thanki; Helge Weissig; John D Westbrook; Christine Zardecki
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-05-29

7.  An evaluation of methods for detecting brain activations from functional neuroimages.

Authors:  Ana S Lukic; Miles N Wernick; Stephen C Strother
Journal:  Artif Intell Med       Date:  2002-05       Impact factor: 5.326

8.  Role of the primate superior colliculus in the control of head movements.

Authors:  Mark M G Walton; Bernard Bechara; Neeraj J Gandhi
Journal:  J Neurophysiol       Date:  2007-06-20       Impact factor: 2.714

Review 9.  Functional neuroimaging of cognition.

Authors:  M D'Esposito
Journal:  Semin Neurol       Date:  2000       Impact factor: 3.420

10.  Design and implementation of microarray gene expression markup language (MAGE-ML).

Authors:  Paul T Spellman; Michael Miller; Jason Stewart; Charles Troup; Ugis Sarkans; Steve Chervitz; Derek Bernhart; Gavin Sherlock; Catherine Ball; Marc Lepage; Marcin Swiatek; W L Marks; Jason Goncalves; Scott Markel; Daniel Iordan; Mohammadreza Shojatalab; Angel Pizarro; Joe White; Robert Hubley; Eric Deutsch; Martin Senger; Bruce J Aronow; Alan Robinson; Doug Bassett; Christian J Stoeckert; Alvis Brazma
Journal:  Genome Biol       Date:  2002-08-23       Impact factor: 13.583

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  16 in total

Review 1.  Sharing heterogeneous data: the national database for autism research.

Authors:  Dan Hall; Michael F Huerta; Matthew J McAuliffe; Gregory K Farber
Journal:  Neuroinformatics       Date:  2012-10

Review 2.  Data publishing and scientific journals: the future of the scientific paper in a world of shared data.

Authors:  Erik De Schutter
Journal:  Neuroinformatics       Date:  2010-10

3.  PhysiomeSpace: digital library service for biomedical data.

Authors:  Debora Testi; Paolo Quadrani; Marco Viceconti
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2010-06-28       Impact factor: 4.226

4.  Interacting with the National Database for Autism Research (NDAR) via the LONI Pipeline workflow environment.

Authors:  Carinna M Torgerson; Catherine Quinn; Ivo Dinov; Zhizhong Liu; Petros Petrosyan; Kevin Pelphrey; Christian Haselgrove; David N Kennedy; Arthur W Toga; John Darrell Van Horn
Journal:  Brain Imaging Behav       Date:  2015-03       Impact factor: 3.978

5.  Understanding complexity in the human brain.

Authors:  Danielle S Bassett; Michael S Gazzaniga
Journal:  Trends Cogn Sci       Date:  2011-04-14       Impact factor: 20.229

6.  Musings of a post-stimulus mind...

Authors:  David N Kennedy
Journal:  Neuroinformatics       Date:  2009-05-12

7.  Is it time to re-prioritize neuroimaging databases and digital repositories?

Authors:  John Darrell Van Horn; Arthur W Toga
Journal:  Neuroimage       Date:  2009-04-14       Impact factor: 6.556

8.  Why share data? Lessons learned from the fMRIDC.

Authors:  John Darrell Van Horn; Michael S Gazzaniga
Journal:  Neuroimage       Date:  2012-11-13       Impact factor: 6.556

9.  The central role of neuroinformatics in the National Academy of Engineering's grandest challenge: reverse engineer the brain.

Authors:  Badrinath Roysam; William Shain; Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2009-01-13

10.  Towards reproducible descriptions of neuronal network models.

Authors:  Eilen Nordlie; Marc-Oliver Gewaltig; Hans Ekkehard Plesser
Journal:  PLoS Comput Biol       Date:  2009-08-07       Impact factor: 4.475

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