Literature DB >> 18470218

Genome conservation among three legume genera detected with DNA markers.

S R Boutin, N D Young, T C Olson, Z H Yu, C E Vallejos, R C Shoemaker.   

Abstract

A set of 219 DNA clones derived from mungbean (Vigna radiata), cowpea (V. unguiculata), common bean (Phaseolus vulgaris), and soybean (Glycine max) were used to generate comparative linkage maps among mungbean, common bean, and soybean. The maps allowed an assessment of linkage conservation and collinearity among the three genomes. Mungbean and common bean, both of the subtribe Phaseolinae, exhibited a high degree of linkage conservation and preservation of marker order. Most linkage groups of mungbean consisted of only one or two linkage blocks from common bean (and vice versa). The situation was significantly different with soybean, a member of the subtribe Glycininae. Mungbean and common bean linkage groups were generally mosaics of short soybean linkage blocks, each only a few centimorgans in length. These results suggest that it would be fruitful to join maps of mungbean and common bean, while knowledge of conserved genomic blocks would be useful in increasing marker density in specific genomic regions for all three genera. These comparative maps may also contribute to enhanced understanding of legume evolution.

Entities:  

Year:  1995        PMID: 18470218     DOI: 10.1139/g95-122

Source DB:  PubMed          Journal:  Genome        ISSN: 0831-2796            Impact factor:   2.166


  33 in total

1.  Construction and characterization of a common bean bacterial artificial chromosome library.

Authors:  W Vanhouten; S MacKenzie
Journal:  Plant Mol Biol       Date:  1999-08       Impact factor: 4.076

Review 2.  Contributions of plant molecular systematics to studies of molecular evolution.

Authors:  E D Soltis; P S Soltis
Journal:  Plant Mol Biol       Date:  2000-01       Impact factor: 4.076

3.  Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants.

Authors:  Theresa M Fulton; Rutger Van der Hoeven; Nancy T Eannetta; Steven D Tanksley
Journal:  Plant Cell       Date:  2002-07       Impact factor: 11.277

Review 4.  Sequencing the genespaces of Medicago truncatula and Lotus japonicus.

Authors:  Nevin D Young; Steven B Cannon; Shusei Sato; Dongjin Kim; Douglas R Cook; Chris D Town; Bruce A Roe; Satoshi Tabata
Journal:  Plant Physiol       Date:  2005-04       Impact factor: 8.340

Review 5.  Bridging model and crop legumes through comparative genomics.

Authors:  Hongyan Zhu; Hong-Kyu Choi; Douglas R Cook; Randy C Shoemaker
Journal:  Plant Physiol       Date:  2005-04       Impact factor: 8.340

6.  Estimating genome conservation between crop and model legume species.

Authors:  Hong-Kyu Choi; Jeong-Hwan Mun; Dong-Jin Kim; Hongyan Zhu; Jong-Min Baek; Joanne Mudge; Bruce Roe; Noel Ellis; Jeff Doyle; Gyorgy B Kiss; Nevin D Young; Douglas R Cook
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-15       Impact factor: 11.205

7.  Microsynteny between pea and Medicago truncatula in the SYM2 region.

Authors:  Gustavo Gualtieri; Olga Kulikova; Erik Limpens; Dong-Jin Kim; Douglas R Cook; Ton Bisselin; René Geurts
Journal:  Plant Mol Biol       Date:  2002-09       Impact factor: 4.076

8.  Synteny mapping between common bean and soybean reveals extensive blocks of shared loci.

Authors:  Phillip E McClean; Sujan Mamidi; Melody McConnell; Shireen Chikara; Rian Lee
Journal:  BMC Genomics       Date:  2010-03-18       Impact factor: 3.969

9.  Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek).

Authors:  Sithichoke Tangphatsornruang; Prakit Somta; Pichahpuk Uthaipaisanwong; Juntima Chanprasert; Duangjai Sangsrakru; Worapa Seehalak; Warunee Sommanas; Somvong Tragoonrung; Peerasak Srinives
Journal:  BMC Plant Biol       Date:  2009-11-24       Impact factor: 4.215

10.  Single strand conformation polymorphism based SNP and Indel markers for genetic mapping and synteny analysis of common bean (Phaseolus vulgaris L.).

Authors:  Carlos H Galeano; Andrea C Fernández; Marcela Gómez; Matthew W Blair
Journal:  BMC Genomics       Date:  2009-12-23       Impact factor: 3.969

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