Literature DB >> 18464991

Scope and limitations of the SCS-MP2 method for stacking and hydrogen bonding interactions.

Rafał A Bachorz1, Florian A Bischoff, Sebastian Höfener, Wim Klopper, Philipp Ottiger, Roman Leist, Jann A Frey, Samuel Leutwyler.   

Abstract

Fluorobenzenes are pi-acceptor synthons that form pi-stacked structures in molecular crystals as well as in artificial DNAs. We investigate the competition between hydrogen bonding and pi-stacking in dimers consisting of the nucleobase mimic 2-pyridone (2PY) and all fluorobenzenes from 1-fluorobenzene to hexafluorobenzene (n-FB, with n = 1-6). We contrast the results of high level ab initio calculations with those obtained using ultraviolet (UV) and infrared (IR) laser spectroscopy of isolated and supersonically cooled dimers. The 2PY.n-FB complexes with n = 1-5 prefer double hydrogen bonding over pi-stacking, as diagnosed from the UV absorption and IR laser depletion spectra, which both show features characteristic of doubly H-bonded complexes. The 2-pyridone.hexafluorobenzene dimer is the only pi-stacked dimer, exhibiting a homogeneously broadened UV spectrum and no IR bands characteristic for H-bonded species. MP2 (second-order Møller-Plesset perturbation theory) calculations overestimate the pi-stacked dimer binding energies by about 10 kJ/mol and disagree with the experimental observations. In contrast, the MP2 treatment of the H-bonded dimers appears to be quite accurate. Grimme's spin-component-scaled MP2 approach (SCS-MP2) is an improvement over MP2 for the pi-stacked dimers, reducing the binding energy by approximately 10 kJ/mol. When applied to explicitly correlated MP2 theory (SCS-MP2-R12 approach), agreement with the corresponding coupled-cluster binding energies [at the CCSD(T) level] is very good for the pi-stacked dimers, within +/- 1 kJ/mol for the 2PY complexes with 1-fluorobenzene, 1,2-difluorobenzene, 1,2,4,5-tetrafluorobenzene, pentafluorobenzene and hexafluorobenzene. Unfortunately, the SCS-MP2 approach also reduces the binding energy of the H-bonded species, leading to disagreement with both coupled-cluster theory and experiment. The SCS-MP2-R12 binding energies follow the SCS-MP2 binding energies closely, being about 0.5 and 0.7 kJ/mol larger for the H-bonded and pi-stacked forms, respectively, in an augmented correlation-consistent polarized valence quadruple-zeta basis. It seems that the SCS-MP2 and SCS-MP2-R12 methods cannot provide sufficient accuracy to replace the CCSD(T) method for intermolecular interactions where H-bonding and pi-stacking are competitive.

Entities:  

Year:  2008        PMID: 18464991     DOI: 10.1039/b718494h

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  7 in total

1.  Role of size and shape selectivity in interaction between gold nanoclusters and imidazole: a theoretical study.

Authors:  Muthuramalingam Prakash; Gilberte Chambaud; M Mogren Al-Mogren; Majdi Hochlaf
Journal:  J Mol Model       Date:  2014-12-09       Impact factor: 1.810

2.  A reinvestigation of the dimer of para-benzoquinone and pyrimidine with MP2, CCSD(T), and DFT using functionals including those designed to describe dispersion.

Authors:  Mateusz Marianski; Antoni Oliva; J J Dannenberg
Journal:  J Phys Chem A       Date:  2012-07-19       Impact factor: 2.781

3.  DL-3-Aminoisobutyric acid: vibrational, NBO and AIM analysis of N-H⋯O bonded-zwitterionic dimer model.

Authors:  Shashikala Yalagi; Jagdish Tonannavar; Jayashree Tonannavar
Journal:  Heliyon       Date:  2019-06-18

4.  Resonance-assisted/impaired anion-π interaction: towards the design of novel anion receptors.

Authors:  Juan Du; Changwei Wang; Shiwei Yin; Wenliang Wang; Yirong Mo
Journal:  RSC Adv       Date:  2020-10-01       Impact factor: 3.361

5.  Ring opening of 2-aza-3-borabicyclo[2.2.0]hex-5-ene, the Dewar form of 1,2-dihydro-1,2-azaborine: stepwise versus concerted mechanisms.

Authors:  Holger F Bettinger; Otto Hauler
Journal:  Beilstein J Org Chem       Date:  2013-04-18       Impact factor: 2.883

6.  Soft hydrogen bonds to alkenes: the methanol-ethene prototype under experimental and theoretical scrutiny.

Authors:  Matthias Heger; Ricardo A Mata; Martin A Suhm
Journal:  Chem Sci       Date:  2015-05-11       Impact factor: 9.825

7.  Origin of the Diastereoselectivity of the Heterogeneous Hydrogenation of a Substituted Indolizine.

Authors:  Rodrigo A Cormanich; Lucas A Zeoly; Hugo Santos; Nilton S Camilo; Michael Bühl; Fernando Coelho
Journal:  J Org Chem       Date:  2020-08-26       Impact factor: 4.354

  7 in total

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