Literature DB >> 18463990

IMGT, the International ImMunoGeneTics Information System for Immunoinformatics : methods for querying IMGT databases, tools, and web resources in the context of immunoinformatics.

Marie-Paule Lefranc1.   

Abstract

IMGT, the International ImMunoGeneTics information system ( http://imgt.cines.fr ), was created in 1989 by the Laboratoire d'ImmunoGénétique Moléculaire (LIGM) (Université Montpellier 2 and CNRS) at Montpellier, France, in order to standardize and manage the complexity of immunogenetics data. IMGT is recognized as the international reference in immunogenetics and immunoinformatics. IMGT is a high quality integrated knowledge resource, specialized in (i) the immunoglobulins (IG), T cell receptors (TR), major histocompatibility complex (MHC) of human and other vertebrates; (ii) proteins that belong to the immunoglobulin superfamily (IgSF) and to the MHC superfamily (MhcSF); and (iii) related proteins of the immune systems (RPI) of any species. IMGT provides a common access to standardized data from genome, proteome, genetics, and three-dimensional (3D) structures for the IG, TR, MHC, IgSF, MhcSF, and RPI. IMGT interactive on-line tools are provided for genome, sequence, and 3D structure analysis. IMGT Web resources comprise 10,000 HTML pages of synthesis and knowledge (IMGT Scientific chart, IMGT Repertoire, IMGT Education, etc.) and external links (IMGT Bloc-notes and IMGT other accesses).

Entities:  

Mesh:

Year:  2008        PMID: 18463990     DOI: 10.1007/s12033-008-9062-7

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  33 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Guidelines for human gene nomenclature.

Authors:  Hester M Wain; Elspeth A Bruford; Ruth C Lovering; Michael J Lush; Mathew W Wright; Sue Povey
Journal:  Genomics       Date:  2002-04       Impact factor: 5.736

3.  IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis.

Authors:  Véronique Giudicelli; Denys Chaume; Marie-Paule Lefranc
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

4.  A simple method to predict protein-binding from aligned sequences--application to MHC superfamily and beta2-microglobulin.

Authors:  Elodie Duprat; Marie-Paule Lefranc; Olivier Gascuel
Journal:  Bioinformatics       Date:  2005-12-13       Impact factor: 6.937

5.  GDB: the Human Genome Database.

Authors:  S I Letovsky; R W Cottingham; C J Porter; P W Li
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

6.  EMBL Nucleotide Sequence Database: developments in 2005.

Authors:  Guy Cochrane; Philippe Aldebert; Nicola Althorpe; Mikael Andersson; Wendy Baker; Alastair Baldwin; Kirsty Bates; Sumit Bhattacharyya; Paul Browne; Alexandra van den Broek; Matias Castro; Karyn Duggan; Ruth Eberhardt; Nadeem Faruque; John Gamble; Carola Kanz; Tamara Kulikova; Charles Lee; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Michelle McHale; Hamish McWilliam; Gaurab Mukherjee; Francesco Nardone; Maria Pilar Garcia Pastor; Siamak Sobhany; Peter Stoehr; Katerina Tzouvara; Robert Vaughan; Dan Wu; Weimin Zhu; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

8.  DDBJ in preparation for overview of research activities behind data submissions.

Authors:  Kousaku Okubo; Hideaki Sugawara; Takashi Gojobori; Yoshio Tateno
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

9.  Entrez Gene: gene-centered information at NCBI.

Authors:  Donna Maglott; Jim Ostell; Kim D Pruitt; Tatiana Tatusova
Journal:  Nucleic Acids Res       Date:  2006-12-05       Impact factor: 16.971

10.  IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes.

Authors:  Véronique Giudicelli; Denys Chaume; Marie-Paule Lefranc
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

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  15 in total

1.  Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma.

Authors:  Silvia Zibellini; Daniela Capello; Francesco Forconi; Paolo Marcatili; Davide Rossi; Sara Rattotti; Silvia Franceschetti; Elisa Sozzi; Emanuele Cencini; Roberto Marasca; Luca Baldini; Alessandra Tucci; Francesco Bertoni; Francesco Passamonti; Ester Orlandi; Marzia Varettoni; Michele Merli; Silvia Rizzi; Valter Gattei; Anna Tramontano; Marco Paulli; Gianluca Gaidano; Luca Arcaini
Journal:  Haematologica       Date:  2010-05-29       Impact factor: 9.941

2.  Alternative pathway for the development of Vα14+ NKT cells directly from CD4-CD8- thymocytes that bypasses the CD4+CD8+ stage.

Authors:  Nyambayar Dashtsoodol; Tomokuni Shigeura; Minako Aihara; Ritsuko Ozawa; Satoshi Kojo; Michishige Harada; Takaho A Endo; Takashi Watanabe; Osamu Ohara; Masaru Taniguchi
Journal:  Nat Immunol       Date:  2017-01-30       Impact factor: 25.606

3.  Transpo-mAb display: Transposition-mediated B cell display and functional screening of full-length IgG antibody libraries.

Authors:  Lorenz Waldmeier; Ina Hellmann; Chantal K Gutknecht; Fabian I Wolter; Skylar C Cook; Sai T Reddy; Ulf Grawunder; Roger R Beerli
Journal:  MAbs       Date:  2016-03-17       Impact factor: 5.857

4.  VDJ-Seq: Deep Sequencing Analysis of Rearranged Immunoglobulin Heavy Chain Gene to Reveal Clonal Evolution Patterns of B Cell Lymphoma.

Authors:  Yanwen Jiang; Kui Nie; David Redmond; Ari M Melnick; Wayne Tam; Olivier Elemento
Journal:  J Vis Exp       Date:  2015-12-28       Impact factor: 1.355

5.  Identification of T cell clones without the need for sequencing.

Authors:  Ryan J Martinez; Dennis K Neeld; Brian D Evavold
Journal:  J Immunol Methods       Date:  2015-05-08       Impact factor: 2.303

6.  Violation of the 12/23 rule of genomic V(D)J recombination is common in lymphocytes.

Authors:  Nicholas J Parkinson; Matthew Roddis; Ben Ferneyhough; Gang Zhang; Adam J Marsden; Siarhei Maslau; Yasmin Sanchez-Pearson; Thomas Barthlott; Ian R Humphreys; Kristin Ladell; David A Price; Chris P Ponting; Georg Hollander; Michael D Fischer
Journal:  Genome Res       Date:  2014-11-03       Impact factor: 9.043

7.  Analysis of immunoglobulin transcripts and hypermutation following SHIV(AD8) infection and protein-plus-adjuvant immunization.

Authors:  Joseph R Francica; Zizhang Sheng; Zhenhai Zhang; Yoshiaki Nishimura; Masashi Shingai; Akshaya Ramesh; Brandon F Keele; Stephen D Schmidt; Barbara J Flynn; Sam Darko; Rebecca M Lynch; Takuya Yamamoto; Rodrigo Matus-Nicodemos; David Wolinsky; Martha Nason; Nicholas M Valiante; Padma Malyala; Ennio De Gregorio; Susan W Barnett; Manmohan Singh; Derek T O'Hagan; Richard A Koup; John R Mascola; Malcolm A Martin; Thomas B Kepler; Daniel C Douek; Lawrence Shapiro; Robert A Seder
Journal:  Nat Commun       Date:  2015-04-10       Impact factor: 14.919

8.  Immunoglobulin and T Cell Receptor Genes: IMGT(®) and the Birth and Rise of Immunoinformatics.

Authors:  Marie-Paule Lefranc
Journal:  Front Immunol       Date:  2014-02-05       Impact factor: 7.561

9.  Immunoglobulins: 25 years of immunoinformatics and IMGT-ONTOLOGY.

Authors:  Marie-Paule Lefranc
Journal:  Biomolecules       Date:  2014-12-16

10.  Germline Amino Acid Diversity in B Cell Receptors is a Good Predictor of Somatic Selection Pressures.

Authors:  Gregory W Schwartz; Uri Hershberg
Journal:  Front Immunol       Date:  2013-11-08       Impact factor: 7.561

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