| Literature DB >> 18461123 |
Judith Legrand1, Alexandra Sanchez, Francoise Le Pont, Luiz Camacho, Bernard Larouze.
Abstract
BACKGROUND: Tuberculosis (TB) in prisons is a major health problem in countries of high and intermediate TB endemicity such as Brazil. For operational reasons, TB control strategies in prisons cannot be compared through population based intervention studies. METHODOLOGY/PRINCIPALEntities:
Mesh:
Year: 2008 PMID: 18461123 PMCID: PMC2324198 DOI: 10.1371/journal.pone.0002100
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Structure of the mathematical model for the dynamics of tuberculosis in prison.
Each box represents a compartment: Susceptible individuals (S), latent fast progressors (E), latent slow progressors (L), cured individuals (R), infectious/non-infectious cases who will be detected and treated (Di/Dn), infectious/non-infectious cases who will not be detected and treated (Ti/Tn), infectious/non-infectious treated cases with treatment failure (Yi/Yn). Red boxes represent a disease-infectious state, pink boxes represent a disease-non infectious state and grey boxes represent infected individuals without disease. Entries and discharges in and out of the prison are not represented on this figure.
Definitions and values of model parameters
| Parameter | Definition | Current scenario | Values in S1–S7 | Distribution for LHS | Units | References | ||
| min | peak | max | ||||||
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| Number of inmates at the beginning of simulations | 1000 | 1000 | person | ||||
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| Transmission rate | 11.10−3 | 11.10−3 | 10.10−3 | 15.10−3 | /person/year |
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| Proportion of fast progressors | 0.14 | 0.14 | 0.08 | 0.14 | 0.25 |
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| Partial immunity afforded by previous infection | 0.41 | 0.41 | 0.4 | 0.9 |
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| Rate at which slow progressors develop TB | 0.00256 | 0.00256 | 0.00256 | 0.00527 | /year |
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| Rate at which fast progressors develop TB | 0.9638 | 0.9638 | 0.76 | 0.99 | /year |
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| Proportion of TB cases who become infectious | 0.65 | 0.65 | 0.5 | 0.65 | 0.85 |
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| Rate of smear conversion | 0.015 | 0.015 | 0 | 0.02 | /year |
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| Proportion of treated cases who are cured | 0.65 | 0.85 | UD | ||||
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| Rate at which cases in Di and Dn (see | 3.43 | 3.43 | 2.4 | 6.0 | /year | PC | |
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| Rate of relapse | 0.01 | 0.01 | 0 | 0.01 | 0.03 | /year |
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| Rate of self cure for non treated infectious cases | 0.058 | 0.058 | 0.021 | 0.058 | 0.086 | /year |
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| Rate of self cure for non treated non infectious cases | σ1 | σ1 | /year |
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| Untreated TB death rate | 0.14 | 0.14 | 0.058 | 0.139 | 0.461 | /year |
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| Proportion of infectious cases detected | 0.43 | 0.7 | PC | ||||
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| Proportion of non infectious cases detected | 0.34 | 0 | PC | ||||
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| Inmates turnover | 1/3 | 1/3 | /year | UD | |||
| Detection at entry point | No | See | ||||||
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| Sensitivity of the detection of smear+symptomatic cases at entry point | 0.21 | 0.2 | 0.4 |
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LHS: Latin Hypercube Sampling
The parameter distribution for the Latin Hypercube Sampling is triangular when «peak» is specified and is uniform otherwise
UD: Unpublished data obtained in the prison we studied. The proportion of treated cases who are cured was obtained from the follow up records of TB cases. The inmates' turnover was based on the administrative records.
PC: Personal communication A.Sanchez. Parameter k corresponds to the inverse of the average duration of the time from progression to active TB to detection. We set this average duration at 3 months and a half (k = 3.43) with a range 2 months-5 months in the Latin Hypercube Sample.
Description of the transition rates in the model
| Transition number | Transition | Transition rate |
| 1 | (S-1; L+1) | (1-p)βS(Ti+Yi+Di) |
| 2 | (S-1; E+1) | pβS(Ti+Yi+Di) |
| 3 | (L-1; Ti+1) | τ1θ(1-f1)L |
| 4 | (L-1; Tn+1) | τ1(1-θ)(1-f2)L |
| 5 | (E-1; Ti+1) | τ2θ(1-f1)E |
| 6 | (E-1; Tn+1) | τ2(1-θ)(1-f2)E |
| 7 | (L-1; Di+1) | τ1θf1L |
| 8 | (L-1; Dn+1) | τ1(1-θ)f2L |
| 9 | (E-1; Di+1) | τ2θf1E |
| 10 | (E-1; Dn+1) | τ2(1-θ)f2E |
| 11 | (Tn-1; Ti+1) | wTn |
| 12 | (Dn-1; Di+1) | wDn |
| 13 | (Yn-1; Yi+1) | wYn |
| 14 | (Di-1; R+1) | gkDi |
| 15 | (Dn-1; R+1) | gkDn |
| 16 | (Di-1; Yi+1) | (1-g)kDi |
| 17 | (Dn-1; Yn+1) | (1-g)kDn |
| 18 | (Yi-1; Ti+1) | (1-f1)Yi |
| 19 | (Yn-1; Tn+1) | (1-f2)Yn |
| 20 | (Yi-1; Di+1) | f1Yi |
| 21 | (Yn-1; Dn+1) | f2Yn |
| 22 | (Ti-1; R+1) | σ1Ti |
| 23 | (Tn-1; R+1) | σ2Tn |
| 24 | (R-1; Ti+1) | (1-f1)δθR |
| 25 | (R-1; Tn+1) | (1-f2)δ(1-θ)R |
| 26 | (R-1; Di+1) | θδf1R |
| 27 | (R-1; Dn+1) | (1-θ)δf2R |
| 28 | (L-1; E+1) | p(1-m)β(Ti+Yi+Di)L |
| 29 | (R-1; E+1) | p(1-m)β(Ti+Yi+Di)R |
| (S+1) | (eS)Ω | |
| (S-1) | ΠS | |
| (L+1) | (eL)Ω | |
| (L-1) | ΠL | |
| (E+1) | (eE)Ω | |
| (E-1) | ΠE | |
| (Ti+1) | (eTi)Ω | |
| (Ti-1) | ΠTi+ϕTi | |
| (Tn+1) | (eTn)Ω | |
| (Tn-1) | ΠTn+ϕTn | |
| (Di+1) | (eDi)Ω | |
| (Di-1) | ΠDi | |
| (Dn+1) | (eDn)Ω | |
| (Dn-1) | ΠDn | |
| (Yi+1) | (eYi)Ω | |
| (Yi-1) | ΠYi | |
| (Yn+1) | (eYn)Ω | |
| (Yn-1) | ΠYn | |
| (R+1) | (eR)Ω | |
| (R-1) | ΠR |
We denote Ω the annual number of inmates entering the prison and eX the proportion of prisoners who enter the X compartment. Other parameters definitions are given in table 1. Transition numbers correspond to the numbers on figure 1.
Description of strategies 1 to 7 and predicted prevalence (%) for the current scenario and for each strategy
| In prison | At entry point | Active TB prevalence (all cases) | Bacteriologically positive TB prevalence | |||||||||||||||||||
| DOTS | Annual systematic X-ray screening | Detection of smear+symptomatic cases | Systematic detection with chest X-ray | Year 3 | Year 5 | Year 10 | Year 3 | Year 5 | Year 10 | |||||||||||||
| Median (%) | Mean (%) | P5, P95 | Median (%) | Mean (%) | P5, P95 (%) | Median (%) | Mean (%) | P5, P95 (%) | Median (%) | Mean (%) | P5, P95 | Median (%) | Mean (%) | P5, P95 (%) | Median (%) | Mean (%) | P5, P95 (%) | |||||
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| x | 4.6 | 4.6 | 3.4, 5.9 | 4.4 | 4.5 | 3.1, 6.0 | 4.3 | 4.4 | 2.6, 6.2 | 3.0 | 3.0 | 1.9, 4.1 | 2.8 | 2.9 | 1.7, 4.1 | 2.8 | 2.8 | 1.5, 4.2 | |||
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| x | 3.3 | 3.4 | 2.4, 4.5 | 2.8 | 2.8 | 1.8, 4.0 | 2.2 | 2.2 | 1.3, 3.3 | 1.7 | 1.7 | 1.1, 2.6 | 1.4 | 1.4 | 0.7, 2.1 | 1.1 | 1.1 | 0.4, 1.8 | |||
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| x | x | 3.3 | 3.3 | 2.3, 4.4 | 2.8 | 2.8 | 1.8, 4.0 | 2.0 | 2.1 | 1.1, 3.2 | 1.7 | 1.7 | 0.9, 2.5 | 1.3 | 1.3 | 0.6, 2.2 | 0.9 | 1 | 0.4, 1.7 | ||
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| x | x | 2.8 | 2.8 | 1.9, 3.9 | 2.1 | 2.2 | 1.3, 3.2 | 1.3 | 1.4 | 0.6, 2.4 | 1.4 | 1.4 | 0.8, 2.1 | 1.1 | 1.1 | 0.5, 1.8 | 0.6 | 0.7 | 0.2, 1.3 | ||
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| x | x | x | 0.8 | 0.7 | 0.3, 1.2 | 0.6 | 0.6 | 0.2, 1.1 | 0.5 | 0.5 | 0.2, 1.0 | 0.4 | 0.4 | 0.1, 0.7 | 0.3 | 0.3 | 0.0, 0.6 | 0.3 | 0.3 | 0.0, 0.6 | |
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| x | x | x | 0.4 | 0.5 | 0.2, 0.8 | 0.3 | 0.3 | 0.0, 0.6 | 0.2 | 0.3 | 0.0, 0.6 | 0.2 | 0.2 | 0.0, 0.5 | 0.1 | 0.2 | 0.0, 0.4 | 0.1 | 0.1 | 0.0, 0.4 | |
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| x | 3 screenings | x | 0.5 | 0.5 | 0.1, 0.8 | 0.7 | 0.7 | 0.2, 1.2 | 0.8 | 0.9 | 0.3, 1.6 | 0.2 | 0.3 | 0.0, 0.6 | 0.3 | 0.3 | 0.0, 0.7 | 0.4 | 0.4 | 0.1, 0.9 | |
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| x | 3 screenings | 2 1st years | 0.7 | 0.7 | 0.3, 1.2 | 1.2 | 1.2 | 0.6, 1.9 | 1.7 | 1.7 | 0.8, 2.7 | 0.4 | 0.4 | 0.1, 0.7 | 0.6 | 0.6 | 0.2, 1.1 | 0.8 | 0.8 | 0.3, 1.4 | |
+ C = Current scenario
DOTS: Case detection through quality assured-bacteriology and standardized treatment, with supervision and patient support.
For the current scenario: Passive detection of 43% of new infectious cases, 34% of new non-infectious cases and cure rate of 65% of detected cases
For S1–S7: Passive detection of 70% of new bacteriologically-positive cases and cure rate of 85% of detected cases
x This method is implemented for this strategy
Screenings at the start and after 1 and 2 years
Percentiles 5 and 95
Figure 2Predicted prevalence (%) of active TB.
Simulations are performed over a 10 years period for the seven strategies (black lines) and for the current scenario (grey lines). The continuous line represents the mean of the prevalence on 600 simulations and the vertical line extremities represent percentiles 5 and 95.
Figure 3Histograms of the twelve parameters in the sample generated with LHS method.
Figure 4Results of the uncertainty analysis.
Boxplots of the average prevalence after 10 years (%). For each set of parameters of the sample generated by the Latin Hypercube Sampling method and each strategy, we performed 600 runs of the model and computed the average prevalence after 10 years. Each boxplot represents the median, the first and third quartiles (Q1 and Q3), the mean and the maximum and minimum values which are in the range [Q1−1.5 IQR, Q3+1.5 IQR] with IQR equal to the inter-quartile range (Q3-Q1).
Partial rank correlation coefficient (PRCC) between each parameter and the average predicted prevalence after 10 years, for the current scenario and TB control strategies S1–S7.
| Definition parameter | Partial rank correlation coefficient | ||||||||
| C | S1 | S2 | S3 | S4 | S5 | S6 | S7 | ||
| β | Transmission rate |
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| p | Proportion of fast progressors |
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| m | Partial immunity afforded by previous infection |
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| −0. 57 |
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| τ1 | Rate at which slow progressors develop TB | 0. 31 | 0. 48 | 0. 49 | 0. 58 |
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| τ2 | Rate at which fast progressors develop TB | 0. 25 | 0. 22 | 0. 21 | 0. 22 | 0. 22 | 0. 27 | 0. 26 | 0. 28 |
| θ | Proportion of TB cases who become infectious | 0. 59 | 0. 18 | 0. 10 | 0. 33 | −0. 55 | 0. 04 | 0. 32 | 0. 14 |
| ω | Rate of smear conversion | 0. 09 | 0. 15 | 0. 14 | 0. 15 | 0. 04 | 0. 07 | 0. 13 | 0. 12 |
| δ | Rate of relapse | 0. 17 | 0. 26 | 0. 28 | 0. 36 | 0. 58 |
| 0. 52 | 0. 35 |
| σ1 | Rate of self cure for non treated infectious cases | −0. 34 | −0. 41 | −0. 40 | −0. 39 | −0. 16 | −0. 11 | −0. 34 | −0. 39 |
| ϕ | Death rate of untreated TB |
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| −0. 52 |
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| k | Rate at which detected cases are detected and treated | −0. 31 |
| −0. 59 | −0. 57 |
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| Se | Sensitivity of the detection of smear+symptomatic cases at entry point | 0. 02 | 0. 02 | −0. 17 | 0. 02 | −0. 46 | 0. 00 | 0. 03 | 0. 02 |
PRCC over 0.6 in absolute values are in bold.