Literature DB >> 18458826

Statistical properties of the dichotomous noise generated in biochemical processes.

Michał Kurzyński1.   

Abstract

Dichotomous noise detected with the help of various single-molecule techniques convincingly reveals the actual occurrence of a multitude of conformational substates composing the native state of proteins. The nature of the stochastic dynamics of transitions between these substates is determined by the particular statistical properties of the noise observed. These involve nonexponential and possibly oscillatory time decay of the second order autocorrelation function, its relation to the third order autocorrelation function, and a relationship to dwell-time distribution densities and their correlations. Processes gated by specific conformational substates are distinguished from those with fluctuating barriers. This study throws light on the intriguing matter of the possibility of multiple stepping of the myosin motor along the actin filament per ATP molecule hydrolyzed.

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Year:  2008        PMID: 18458826      PMCID: PMC6275961          DOI: 10.2478/s11658-008-0021-x

Source DB:  PubMed          Journal:  Cell Mol Biol Lett        ISSN: 1425-8153            Impact factor:   5.787


  18 in total

1.  Single-molecule enzymology: stochastic Michaelis-Menten kinetics.

Authors:  Hong Qian; Elliot L Elson
Journal:  Biophys Chem       Date:  2002-12-10       Impact factor: 2.352

2.  Cytoplasmic dynein functions as a gear in response to load.

Authors:  Roop Mallik; Brian C Carter; Stephanie A Lex; Stephen J King; Steven P Gross
Journal:  Nature       Date:  2004-02-12       Impact factor: 49.962

3.  Stretched exponential decay and correlations in the catalytic activity of fluctuating single lipase molecules.

Authors:  Ophir Flomenbom; Kelly Velonia; Davey Loos; Sadahiro Masuo; Mircea Cotlet; Yves Engelborghs; Johan Hofkens; Alan E Rowan; Roeland J M Nolte; Mark Van der Auweraer; Frans C de Schryver; Joseph Klafter
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-04       Impact factor: 11.205

4.  Using independent open-to-closed transitions to simplify aggregated Markov models of ion channel gating kinetics.

Authors:  William J Bruno; Jin Yang; John E Pearson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-20       Impact factor: 11.205

5.  On the hand-over-hand mechanism of kinesin.

Authors:  Qiang Shao; Yi Qin Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-12       Impact factor: 11.205

6.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

Review 7.  A synthetic picture of intramolecular dynamics of proteins. Towards a contemporary statistical theory of biochemical processes.

Authors:  M Kurzyński
Journal:  Prog Biophys Mol Biol       Date:  1998       Impact factor: 3.667

8.  Mechanical Properties of a Single-Headed Processive Motor, Inner-Arm Dynein Subspecies-c of ChlamydomonasStudied at the Single Molecule Level.

Authors:  H Kojima; M Kikumoto; H Sakakibara; K Oiwa
Journal:  J Biol Phys       Date:  2002-09       Impact factor: 1.365

9.  Markov, fractal, diffusion, and related models of ion channel gating. A comparison with experimental data from two ion channels.

Authors:  M S Sansom; F G Ball; C J Kerry; R McGee; R L Ramsey; P N Usherwood
Journal:  Biophys J       Date:  1989-12       Impact factor: 4.033

10.  Single-molecule enzymatic dynamics.

Authors:  H P Lu; L Xun; X S Xie
Journal:  Science       Date:  1998-12-04       Impact factor: 47.728

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