Literature DB >> 18453254

StemBase: a resource for the analysis of stem cell gene expression data.

Christopher J Porter1, Gareth A Palidwor, Reatha Sandie, Paul M Krzyzanowski, Enrique M Muro, Carolina Perez-Iratxeta, Miguel A Andrade-Navarro.   

Abstract

StemBase is a database of gene expression data obtained from stem cells and derivatives mainly from mouse and human using DNA microarrays and Serial Analysis of Gene Expression. Here, we describe this database and indicate ways to use it for the study the expression of particular genes in stem cells or to search for genes with particular expression profiles in stem cells, which could be associated to stem cell function or used as stem cell markers.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 18453254     DOI: 10.1007/978-1-59745-536-7_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

1.  Snail regulates MyoD binding-site occupancy to direct enhancer switching and differentiation-specific transcription in myogenesis.

Authors:  Vahab D Soleimani; Hang Yin; Arezu Jahani-Asl; Hong Ming; Christel E M Kockx; Wilfred F J van Ijcken; Frank Grosveld; Michael A Rudnicki
Journal:  Mol Cell       Date:  2012-07-05       Impact factor: 17.970

Review 2.  Toward a complete in silico, multi-layered embryonic stem cell regulatory network.

Authors:  Huilei Xu; Christoph Schaniel; Ihor R Lemischka; Avi Ma'ayan
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010 Nov-Dec

3.  Computational Epigenetics: the new scientific paradigm.

Authors:  Shen Jean Lim; Tin Wee Tan; Joo Chuan Tong
Journal:  Bioinformation       Date:  2010-01-23

4.  Functional genomics: new insights into the 'function' of low levels of gene expression in stem cells.

Authors:  Jennifer A Hipp; Jason D Hipp; Anthony Atala; Shay Soker
Journal:  Curr Genomics       Date:  2010-08       Impact factor: 2.236

5.  A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal.

Authors:  Guang Hu; Jonghwan Kim; Qikai Xu; Yumei Leng; Stuart H Orkin; Stephen J Elledge
Journal:  Genes Dev       Date:  2009-04-01       Impact factor: 11.361

6.  ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells.

Authors:  Huilei Xu; Caroline Baroukh; Ruth Dannenfelser; Edward Y Chen; Christopher M Tan; Yan Kou; Yujin E Kim; Ihor R Lemischka; Avi Ma'ayan
Journal:  Database (Oxford)       Date:  2013-06-21       Impact factor: 3.451

7.  SCLD: a Stem Cell Lineage Database for the annotation of cell types and developmental lineages.

Authors:  Edward E Hemphill; Asav P Dharia; Chih Lee; Caroline M Jakuba; Jason D Gibson; Frederick W Kolling; Craig E Nelson
Journal:  Nucleic Acids Res       Date:  2010-10-23       Impact factor: 16.971

8.  The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons.

Authors:  Shannan J Ho Sui; Kimberly Begley; Dorothy Reilly; Brad Chapman; Ray McGovern; Philippe Rocca-Sera; Eamonn Maguire; Gabriel M Altschuler; Terah A A Hansen; Ramakrishna Sompallae; Andrei Krivtsov; Ramesh A Shivdasani; Scott A Armstrong; Aedín C Culhane; Mick Correll; Susanna-Assunta Sansone; Oliver Hofmann; Winston Hide
Journal:  Nucleic Acids Res       Date:  2011-11-24       Impact factor: 16.971

9.  The FunGenES database: a genomics resource for mouse embryonic stem cell differentiation.

Authors:  Herbert Schulz; Raivo Kolde; Priit Adler; Irène Aksoy; Konstantinos Anastassiadis; Michael Bader; Nathalie Billon; Hélène Boeuf; Pierre-Yves Bourillot; Frank Buchholz; Christian Dani; Michael Xavier Doss; Lesley Forrester; Murielle Gitton; Domingos Henrique; Jürgen Hescheler; Heinz Himmelbauer; Norbert Hübner; Efthimia Karantzali; Androniki Kretsovali; Sandra Lubitz; Laurent Pradier; Meena Rai; Jüri Reimand; Alexandra Rolletschek; Agapios Sachinidis; Pierre Savatier; Francis Stewart; Mike P Storm; Marina Trouillas; Jaak Vilo; Melanie J Welham; Johannes Winkler; Anna M Wobus; Antonis K Hatzopoulos
Journal:  PLoS One       Date:  2009-09-03       Impact factor: 3.240

10.  Genomics Portals: integrative web-platform for mining genomics data.

Authors:  Kaustubh Shinde; Mukta Phatak; Freudenberg M Johannes; Jing Chen; Qian Li; Joshi K Vineet; Zhen Hu; Krishnendu Ghosh; Jaroslaw Meller; Mario Medvedovic
Journal:  BMC Genomics       Date:  2010-01-13       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.