Literature DB >> 18452809

Ca2+-dimethylphosphate complex formation: providing insight into Ca2+-mediated local dehydration and membrane fusion in cells.

Jeffrey J Potoff1, Zeena Issa, Charles W Manke, Bhanu P Jena.   

Abstract

Earlier studies using X-ray diffraction, light scattering, photon correlation spectroscopy, and atomic force microscopy, strongly suggest that SNARE-induced membrane fusion in cells proceeds as a result of calcium bridging opposing bilayers. The bridging of phospholipid heads groups in the opposing bilayers by calcium leads to the release of water from hydrated Ca(2+) ions as well as the loosely coordinated water at PO-lipid head groups. Local dehydration of phospholipid head groups and the calcium, bridging opposing bilayers, then leads to destabilization of the lipid bilayers and membrane fusion. This hypothesis was tested in the current study by atomistic molecular dynamic simulations in the isobaric-isothermal ensemble using hydrated dimethylphosphate anions (DMP(-)) and calcium cations. Results from the study demonstrate, formation of DMP-Ca(2+) complexes and the consequent removal of water, supporting the hypothesis. Our study further demonstrates that as a result of Ca(2+)-DMP self-assembly, the distance between anionic oxygens between the two DMP molecules is reduced to 2.92A, which is in close agreement with the 2.8A SNARE-induced apposition established between opposing bilayers, reported earlier from X-ray diffraction measurements.

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Year:  2008        PMID: 18452809      PMCID: PMC4580261          DOI: 10.1016/j.cellbi.2008.03.002

Source DB:  PubMed          Journal:  Cell Biol Int        ISSN: 1065-6995            Impact factor:   3.612


  7 in total

1.  Packing optimization for automated generation of complex system's initial configurations for molecular dynamics and docking.

Authors:  José Mario Martínez; Leandro Martínez
Journal:  J Comput Chem       Date:  2003-05       Impact factor: 3.376

2.  Multistep binding of divalent cations to phospholipid bilayers: a molecular dynamics study.

Authors:  Rainer A Böckmann; Helmut Grubmüller
Journal:  Angew Chem Int Ed Engl       Date:  2004-02-13       Impact factor: 15.336

3.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

4.  Role of Mg2+ and Ca2+ in DNA bending: evidence from an ONIOM-based QM-MM study of a DNA fragment.

Authors:  Neethu Sundaresan; C K S Pillai; Cherumuttathu H Suresh
Journal:  J Phys Chem A       Date:  2006-07-20       Impact factor: 2.781

5.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

6.  Calcium drives fusion of SNARE-apposed bilayers.

Authors:  Aleksandar Jeremic; Marie Kelly; Jin Ah Cho; Sang-Joon Cho; J K Heinrich Horber; Bhanu P Jena
Journal:  Cell Biol Int       Date:  2004       Impact factor: 3.612

7.  Vibrational analysis of nucleic acids. I. The phosphodiester group in dimethyl phosphate model compounds: (CH3O)2PO2-, (CD3O)2PO2-, and (13CH3O)2PO2-.

Authors:  Y Guan; C J Wurrey; G J Thomas
Journal:  Biophys J       Date:  1994-01       Impact factor: 4.033

  7 in total
  10 in total

Review 1.  The neuronal porosome complex in health and disease.

Authors:  Akshata R Naik; Kenneth T Lewis; Bhanu P Jena
Journal:  Exp Biol Med (Maywood)       Date:  2015-08-11

2.  Divalent cation-induced cluster formation by polyphosphoinositides in model membranes.

Authors:  Yu-Hsiu Wang; Agnieszka Collins; Lin Guo; Kathryn B Smith-Dupont; Feng Gai; Tatyana Svitkina; Paul A Janmey
Journal:  J Am Chem Soc       Date:  2012-02-10       Impact factor: 15.419

3.  Function suggests nano-structure: towards a unified theory for secretion rate, a statistical mechanics approach.

Authors:  Ilan Hammel; Isaac Meilijson
Journal:  J R Soc Interface       Date:  2013-09-04       Impact factor: 4.118

4.  Roles of Ca and secretory pathway Ca-ATPase pump type 1 (SPCA1) in intra-Golgi transport.

Authors:  Massimo Micaroni; Alexander A Mironov
Journal:  Commun Integr Biol       Date:  2010-11-01

5.  Hydrodynamics govern the pre-fusion docking time of synaptic vesicles.

Authors:  Pankaj Singh; Chung-Yuen Hui
Journal:  J R Soc Interface       Date:  2018-01       Impact factor: 4.118

Review 6.  Atomic force microscopy: Unraveling the fundamental principles governing secretion and membrane fusion in cells.

Authors:  Bhanu P Jena
Journal:  Ultramicroscopy       Date:  2009-03-28       Impact factor: 2.689

7.  Neuronal Porosome-The Secretory Portal at the Nerve Terminal: It's Structure-Function, Composition, and Reconstitution.

Authors:  Bhanu P Jena
Journal:  J Mol Struct       Date:  2014-09-05       Impact factor: 3.196

Review 8.  Porosome: the secretory portal in cells.

Authors:  Bhanu P Jena
Journal:  Biochemistry       Date:  2009-05-19       Impact factor: 3.162

Review 9.  'Porosome' discovered nearly 20 years ago provides molecular insights into the kiss-and-run mechanism of cell secretion.

Authors:  Bhanu P Jena
Journal:  J Cell Mol Med       Date:  2015-05-28       Impact factor: 5.310

10.  Porosome in Cystic Fibrosis.

Authors:  Bhanu P Jena
Journal:  Discoveries (Craiova)       Date:  2014 Jul-Sep
  10 in total

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