Literature DB >> 18447509

On the number of significant mode-mode anharmonic couplings in vibrational calculations: Correlation-corrected vibrational self-consistent field treatment of di-, tri-, and tetrapeptides.

Liat Pele1, R Benny Gerber.   

Abstract

A computational study is made of the number of important anharmonic mode-mode couplings in the context of vibrational calculations for di-, tri-, and tetrapeptides. The method employed is the correlation-corrected vibrational self-consistent field (CC-VSCF) algorithm, which includes correlation effects between different vibrational modes. It is found that results of good accuracy can be obtained in calculations that include only N log N mode-mode coupling terms, where N is the number of modes. This simplification significantly accelerates CC-VSCF calculations for large molecules. A criterion based on the characteristics of the normal-mode displacements is employed to predict a priori unimportant coupling terms. The criterion is tested statistically using Spearman's rank correlation coefficient. The results are illustrated by calculations for several di-, tri-, and tetrapeptides using semiempirical PM3 potential surfaces. These results are analyzed and a statistical model for error estimation is given. The decrease in the number of included coupling from N(2) to N log N opens possibilities of anharmonic vibrational calculations for large peptides.

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Year:  2008        PMID: 18447509     DOI: 10.1063/1.2909558

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Localization and anharmonicity of the vibrational modes for GC Watson-Crick and Hoogsteen base pairs.

Authors:  Attila Bende; Diana Bogdan; Cristina M Muntean; Cristian Morari
Journal:  J Mol Model       Date:  2011-03-04       Impact factor: 1.810

2.  Raman spectra of long chain hydrocarbons: anharmonic calculations, experiment and implications for imaging of biomembranes.

Authors:  Jiří Šebek; Liat Pele; Eric O Potma; R Benny Gerber
Journal:  Phys Chem Chem Phys       Date:  2011-06-14       Impact factor: 3.676

3.  Towards a scalable and accurate quantum approach for describing vibrations of molecule-metal interfaces.

Authors:  David M Benoit; Bruno Madebene; Inga Ulusoy; Luis Mancera; Yohann Scribano; Sergey Chulkov
Journal:  Beilstein J Nanotechnol       Date:  2011-08-10       Impact factor: 3.649

4.  Largely reduced grid densities in a vibrational self-consistent field treatment do not significantly impact the resultingwavenumbers.

Authors:  Oliver M D Lutz; Bernd M Rode; Günther K Bonn; Christian W Huck
Journal:  Molecules       Date:  2014-12-17       Impact factor: 4.411

  4 in total

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