Literature DB >> 18447358

Effect of O6-methylguanine on the stability of G-quadruplex DNA.

Chongkham S Mekmaysy1, Luigi Petraccone, Nichola C Garbett, Patricia A Ragazzon, Robert Gray, John O Trent, Jonathan B Chaires.   

Abstract

The effects of substitution of O6-methylguanine on the structure and stability of a human telomere quadruplex was studied by circular dichroism, thermal denaturation, analytical ultracentrifugation, and molecular dynamics simulations. The results show that, while quadruplex structures can form containing the modified base, they are much less stable than the normal unmodified structure. The extent of destabilization is critically dependent on the exact position of the modified base within the quadruplex structure.

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Year:  2008        PMID: 18447358     DOI: 10.1021/ja801976h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  Resolution of quadruplex polymorphism by size-exclusion chromatography.

Authors:  M Clarke Miller; John O Trent
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2011-06

2.  Polymorphism and resolution of oncogene promoter quadruplex-forming sequences.

Authors:  M Clarke Miller; Huy T Le; William L Dean; Patrick A Holt; Jonathan B Chaires; John O Trent
Journal:  Org Biomol Chem       Date:  2011-09-21       Impact factor: 3.876

3.  Effects of site-specific guanine C8-modifications on an intramolecular DNA G-quadruplex.

Authors:  Christopher Jacques Lech; Joefina Kim Cheow Lim; Jocelyn Mei Wen Lim; Samir Amrane; Brahim Heddi; Anh Tuân Phan
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

4.  DNA secondary structures and epigenetic determinants of cancer genome evolution.

Authors:  Subhajyoti De; Franziska Michor
Journal:  Nat Struct Mol Biol       Date:  2011-07-03       Impact factor: 15.369

Review 5.  In What Ways Do Synthetic Nucleotides and Natural Base Lesions Alter the Structural Stability of G-Quadruplex Nucleic Acids?

Authors:  Janos Sagi
Journal:  J Nucleic Acids       Date:  2017-10-18

6.  Phenomenological partial-specific volumes for G-quadruplex DNAs.

Authors:  Lance M Hellman; David W Rodgers; Michael Gregory Fried
Journal:  Eur Biophys J       Date:  2009-02-24       Impact factor: 1.733

7.  Calculation of hydrodynamic properties for G-quadruplex nucleic acid structures from in silico bead models.

Authors:  Huy T Le; Robert Buscaglia; William L Dean; Jonathan B Chaires; John O Trent
Journal:  Top Curr Chem       Date:  2013

8.  Repair of O6-methylguanine adducts in human telomeric G-quadruplex DNA by O6-alkylguanine-DNA alkyltransferase.

Authors:  Lance M Hellman; Tyler J Spear; Colton J Koontz; Manana Melikishvili; Michael G Fried
Journal:  Nucleic Acids Res       Date:  2014-07-30       Impact factor: 16.971

9.  Not all G-quadruplexes are created equally: an investigation of the structural polymorphism of the c-Myc G-quadruplex-forming sequence and its interaction with the porphyrin TMPyP4.

Authors:  Huy T Le; M Clarke Miller; Robert Buscaglia; William L Dean; Patrick A Holt; Jonathan B Chaires; John O Trent
Journal:  Org Biomol Chem       Date:  2012-10-29       Impact factor: 3.876

10.  Separation of Quadruplex Polymorphism in DNA Sequences by Reversed-Phase Chromatography.

Authors:  M Clarke Miller; Carl J Ohrenberg; Ashani Kuttan; John O Trent
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2015-06-01
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