Literature DB >> 18446271

Discrete rearranging disordered patterns, part I: robust statistical tools in two or three dimensions.

F Graner1, B Dollet, C Raufaste, P Marmottant.   

Abstract

Discrete rearranging patterns include cellular patterns, for instance liquid foams, biological tissues, grains in polycrystals; assemblies of particles such as beads, granular materials, colloids, molecules, atoms; and interconnected networks. Such a pattern can be described as a list of links between neighbouring sites. Performing statistics on the links between neighbouring sites yields average quantities (hereafter "tools") as the result of direct measurements on images. These descriptive tools are flexible and suitable for various problems where quantitative measurements are required, whether in two or in three dimensions. Here, we present a coherent set of robust tools, in three steps. First, we revisit the definitions of three existing tools based on the texture matrix. Second, thanks to their more general definition, we embed these three tools in a self-consistent formalism, which includes three additional ones. Third, we show that the six tools together provide a direct correspondence between a small scale, where they quantify the discrete pattern's local distortion and rearrangements, and a large scale, where they help describe a material as a continuous medium. This enables to formulate elastic, plastic, fluid behaviours in a common, self-consistent modelling using continuous mechanics. Experiments, simulations and models can be expressed in the same language and directly compared. As an example, a companion paper (P. Marmottant, C. Raufaste, and F. Graner, this issue, 25 (2008) DOI 10.1140/epje/i2007-10300-7) provides an application to foam plasticity.

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Year:  2008        PMID: 18446271     DOI: 10.1140/epje/i2007-10298-8

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  4 in total

1.  On the microscopic foundations of elasticity.

Authors:  I Goldhirsch; C Goldenberg
Journal:  Eur Phys J E Soft Matter       Date:  2002-11       Impact factor: 1.890

2.  Single file diffusion in macroscopic Wigner rings.

Authors:  Gwennou Coupier; Michel Saint Jean; Claudine Guthmann
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-03-23

3.  Plastic response of a 2D Lennard-Jones amorphous solid: detailed analysis of the local rearrangements at very slow strain rate.

Authors:  A Tanguy; F Leonforte; J-L Barrat
Journal:  Eur Phys J E Soft Matter       Date:  2006-07-24       Impact factor: 1.890

4.  An elastic, plastic, viscous model for slow shear of a liquid foam.

Authors:  P Marmottant; F Graner
Journal:  Eur Phys J E Soft Matter       Date:  2007-08-13       Impact factor: 1.890

  4 in total
  17 in total

1.  Mechanical state, material properties and continuous description of an epithelial tissue.

Authors:  Isabelle Bonnet; Philippe Marcq; Floris Bosveld; Luc Fetler; Yohanns Bellaïche; François Graner
Journal:  J R Soc Interface       Date:  2012-05-23       Impact factor: 4.118

2.  Non-linear oscillatory rheological properties of a generic continuum foam model: comparison with experiments and shear-banding predictions.

Authors:  S Bénito; F Molino; C-H Bruneau; T Colin; C Gay
Journal:  Eur Phys J E Soft Matter       Date:  2012-06-22       Impact factor: 1.890

3.  On the study of local-stress rearrangements during quasi-static plastic shear of a model glass: do local-stress components contain enough information?

Authors:  M Tsamados; A Tanguy; F Léonforte; J-L Barrat
Journal:  Eur Phys J E Soft Matter       Date:  2008-05-30       Impact factor: 1.890

4.  Colloquium: Mechanical formalisms for tissue dynamics.

Authors:  Sham Tlili; Cyprien Gay; François Graner; Philippe Marcq; François Molino; Pierre Saramito
Journal:  Eur Phys J E Soft Matter       Date:  2015-05-13       Impact factor: 1.890

Review 5.  Taking the strain: quantifying the contributions of all cell behaviours to changes in epithelial shape.

Authors:  Guy B Blanchard
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-05-19       Impact factor: 6.237

6.  SEGGA: a toolset for rapid automated analysis of epithelial cell polarity and dynamics.

Authors:  Dene L Farrell; Ori Weitz; Marcelo O Magnasco; Jennifer A Zallen
Journal:  Development       Date:  2017-05-01       Impact factor: 6.868

7.  Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing.

Authors:  Raphaël Etournay; Marko Popović; Matthias Merkel; Amitabha Nandi; Corinna Blasse; Benoît Aigouy; Holger Brandl; Gene Myers; Guillaume Salbreux; Frank Jülicher; Suzanne Eaton
Journal:  Elife       Date:  2015-06-23       Impact factor: 8.140

8.  Regional differences in actomyosin contraction shape the primary vesicles in the embryonic chicken brain.

Authors:  Benjamen A Filas; Alina Oltean; Shabnam Majidi; Philip V Bayly; David C Beebe; Larry A Taber
Journal:  Phys Biol       Date:  2012-11-16       Impact factor: 2.583

9.  Unified quantitative characterization of epithelial tissue development.

Authors:  Boris Guirao; Stéphane U Rigaud; Floris Bosveld; Anaïs Bailles; Jesús López-Gay; Shuji Ishihara; Kaoru Sugimura; François Graner; Yohanns Bellaïche
Journal:  Elife       Date:  2015-12-12       Impact factor: 8.140

Review 10.  Using cell deformation and motion to predict forces and collective behavior in morphogenesis.

Authors:  Matthias Merkel; M Lisa Manning
Journal:  Semin Cell Dev Biol       Date:  2016-08-02       Impact factor: 7.727

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