Literature DB >> 18445606

jSquid: a Java applet for graphical on-line network exploration.

Martin Klammer1, Sanjit Roopra, Erik L L Sonnhammer.   

Abstract

UNLABELLED: jSquid is a graph visualization tool for exploring graphs from protein-protein interaction or functional coupling networks. The tool was designed for the FunCoup web site, but can be used for any similar network exploring purpose. The program offers various visualization and graph manipulation techniques to increase the utility for the user. AVAILABILITY: jSquid is available for direct usage and download at http://jSquid.sbc.su.se including source code under the GPLv3 license, and input examples. It requires Java version 5 or higher to run properly. CONTACT: erik.sonnhammer@sbc.su.se SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Mesh：

Year:  2008        PMID： 18445606     DOI： 10.1093/bioinformatics/btn213

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  10 in total

1.  Global networks of functional coupling in eukaryotes from comprehensive data integration.

Authors:  Andrey Alexeyenko; Erik L L Sonnhammer
Journal:  Genome Res       Date:  2009-02-25       Impact factor: 9.043

2.  FNV: light-weight flash-based network and pathway viewer.

Authors:  Ruth Dannenfelser; Alexander Lachmann; Mariola Szenk; Avi Ma'ayan
Journal:  Bioinformatics       Date:  2011-02-23       Impact factor: 6.937

3.  Network-based Identification of novel cancer genes.

Authors:  Gabriel Ostlund; Mats Lindskog; Erik L L Sonnhammer
Journal:  Mol Cell Proteomics       Date:  2009-12-03       Impact factor: 5.911

4.  Cytoscape Web: an interactive web-based network browser.

Authors:  Christian T Lopes; Max Franz; Farzana Kazi; Sylva L Donaldson; Quaid Morris; Gary D Bader
Journal:  Bioinformatics       Date:  2010-07-23       Impact factor: 6.937

5.  Gerontome: a web-based database server for aging-related genes and analysis pipelines.

Authors:  Jekeun Kwon; Byungwook Lee; Haeyoung Chung
Journal:  BMC Genomics       Date:  2010-12-02       Impact factor: 3.969

6.  Comparative interactomics with Funcoup 2.0.

Authors:  Andrey Alexeyenko; Thomas Schmitt; Andreas Tjärnberg; Dmitri Guala; Oliver Frings; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2011-11-21       Impact factor: 16.971

7.  ReCGiP, a database of reproduction candidate genes in pigs based on bibliomics.

Authors:  Lun Yang; Xiangzhe Zhang; Jian Chen; Qishan Wang; Lishan Wang; Yue Jiang; Yuchun Pan
Journal:  Reprod Biol Endocrinol       Date:  2010-08-14       Impact factor: 5.211

8.  FunCoup 4: new species, data, and visualization.

Authors:  Christoph Ogris; Dimitri Guala; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

9.  JNets: exploring networks by integrating annotation.

Authors:  Jamie I Macpherson; John W Pinney; David L Robertson
Journal:  BMC Bioinformatics       Date:  2009-03-26       Impact factor: 3.169

10.  FunCoup 3.0: database of genome-wide functional coupling networks.

Authors:  Thomas Schmitt; Christoph Ogris; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2013-10-31       Impact factor: 16.971
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.