Literature DB >> 18440877

Expression of microRNAs during embryonic development of Xenopus tropicalis.

James C Walker1, Richard M Harland.   

Abstract

microRNAs (miRNAs) are short, non-coding RNAs that regulate gene expression and have prominent roles during early embryo development and organogenesis. We set out to determine the expression pattern of miRNAs in the developmental model system, Xenopus tropicalis. We made probes to predicted primary-miRNA transcripts and performed in situ hybridization. Our data show conserved and novel tissue-specific expression patterns during embryogenesis that suggest functional roles during development.

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Year:  2008        PMID: 18440877      PMCID: PMC2546408          DOI: 10.1016/j.gep.2008.03.002

Source DB:  PubMed          Journal:  Gene Expr Patterns        ISSN: 1567-133X            Impact factor:   1.224


  16 in total

1.  Regulation of miRNA expression during neural cell specification.

Authors:  Lena Smirnova; Anja Gräfe; Andrea Seiler; Stefan Schumacher; Robert Nitsch; F Gregory Wulczyn
Journal:  Eur J Neurosci       Date:  2005-03       Impact factor: 3.386

Review 2.  MicroRNAs: a developing story.

Authors:  Amy E Pasquinelli; Shaun Hunter; John Bracht
Journal:  Curr Opin Genet Dev       Date:  2005-04       Impact factor: 5.578

3.  Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development.

Authors:  A Aziz Aboobaker; Pavel Tomancak; Nipam Patel; Gerald M Rubin; Eric C Lai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-05       Impact factor: 11.205

4.  In situ hybridization: an improved whole-mount method for Xenopus embryos.

Authors:  R M Harland
Journal:  Methods Cell Biol       Date:  1991       Impact factor: 1.441

5.  The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation.

Authors:  Jian-Fu Chen; Elizabeth M Mandel; J Michael Thomson; Qiulian Wu; Thomas E Callis; Scott M Hammond; Frank L Conlon; Da-Zhi Wang
Journal:  Nat Genet       Date:  2005-12-25       Impact factor: 38.330

6.  Stage-specific expression of microRNAs during Xenopus development.

Authors:  Toshiaki Watanabe; Atsushi Takeda; Kazuyuki Mise; Tetsuro Okuno; Toru Suzuki; Naojiro Minami; Hiroshi Imai
Journal:  FEBS Lett       Date:  2005-01-17       Impact factor: 4.124

7.  Identification and characterization of Pkhd1, the mouse orthologue of the human ARPKD gene.

Authors:  Yasuyuki Nagasawa; Sonja Matthiesen; Luiz F Onuchic; Xiaoying Hou; Carsten Bergmann; Ernie Esquivel; Jan Senderek; Zhiyong Ren; Raoul Zeltner; Laszlo Furu; Ellis Avner; Markus Moser; Stefan Somlo; Lisa Guay-Woodford; Reinhard Büttner; Klaus Zerres; Gregory G Germino
Journal:  J Am Soc Nephrol       Date:  2002-09       Impact factor: 10.121

8.  A posteriorising factor, retinoic acid, reveals that anteroposterior patterning controls the timing of neuronal differentiation in Xenopus neuroectoderm.

Authors:  N Papalopulu; C Kintner
Journal:  Development       Date:  1996-11       Impact factor: 6.868

9.  The expansion of the metazoan microRNA repertoire.

Authors:  Jana Hertel; Manuela Lindemeyer; Kristin Missal; Claudia Fried; Andrea Tanzer; Christoph Flamm; Ivo L Hofacker; Peter F Stadler
Journal:  BMC Genomics       Date:  2006-02-15       Impact factor: 3.969

10.  MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system.

Authors:  Marika Kapsimali; Wigard P Kloosterman; Ewart de Bruijn; Frederic Rosa; Ronald H A Plasterk; Stephen W Wilson
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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  11 in total

1.  microRNA-24a is required to repress apoptosis in the developing neural retina.

Authors:  James C Walker; Richard M Harland
Journal:  Genes Dev       Date:  2009-04-16       Impact factor: 11.361

2.  Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis.

Authors:  Javier Armisen; Michael J Gilchrist; Anna Wilczynska; Nancy Standart; Eric A Miska
Journal:  Genome Res       Date:  2009-07-23       Impact factor: 9.043

3.  Identification of novel microRNAs in Xenopus laevis metaphase II arrested eggs.

Authors:  Sakthikumar Ambady; Zheyang Wu; Tanja Dominko
Journal:  Genesis       Date:  2012-02-16       Impact factor: 2.487

4.  MicroRNA-9 reveals regional diversity of neural progenitors along the anterior-posterior axis.

Authors:  Boyan Bonev; Angela Pisco; Nancy Papalopulu
Journal:  Dev Cell       Date:  2011-01-18       Impact factor: 12.270

Review 5.  miR-9: a versatile regulator of neurogenesis.

Authors:  Marion Coolen; Shauna Katz; Laure Bally-Cuif
Journal:  Front Cell Neurosci       Date:  2013-11-20       Impact factor: 5.505

6.  MiR-130a regulates neurite outgrowth and dendritic spine density by targeting MeCP2.

Authors:  Yunjia Zhang; Mengmeng Chen; Zilong Qiu; Keping Hu; Warren McGee; Xiaoping Chen; Jianghong Liu; Li Zhu; Jane Y Wu
Journal:  Protein Cell       Date:  2016-06-01       Impact factor: 14.870

Review 7.  Role of miRNA-9 in Brain Development.

Authors:  Balachandar Radhakrishnan; A Alwin Prem Anand
Journal:  J Exp Neurosci       Date:  2016-10-05

8.  Lin28a uses distinct mechanisms of binding to RNA and affects miRNA levels positively and negatively.

Authors:  Jakub Stanislaw Nowak; Fruzsina Hobor; Angela Downie Ruiz Velasco; Nila Roy Choudhury; Gregory Heikel; Alastair Kerr; Andres Ramos; Gracjan Michlewski
Journal:  RNA       Date:  2016-11-23       Impact factor: 4.942

9.  A Database of microRNA Expression Patterns in Xenopus laevis.

Authors:  Ayisha Ahmed; Nicole J Ward; Simon Moxon; Sara Lopez-Gomollon; Camille Viaut; Matthew L Tomlinson; Ilya Patrushev; Michael J Gilchrist; Tamas Dalmay; Dario Dotlic; Andrea E Münsterberg; Grant N Wheeler
Journal:  PLoS One       Date:  2015-10-27       Impact factor: 3.240

10.  Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements.

Authors:  Joanne L Harding; Stuart Horswell; Claire Heliot; Javier Armisen; Lyle B Zimmerman; Nicholas M Luscombe; Eric A Miska; Caroline S Hill
Journal:  Genome Res       Date:  2013-09-24       Impact factor: 9.043

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