Literature DB >> 18440275

How can ontologies help vector biology?

Pantelis Topalis1, Daniel Lawson, Frank H Collins, Christos Louis.   

Abstract

The reach of genomics has now extended to vector biology, with three mosquito genomes already sequenced and more arthropod vector genomes in the pipeline. The availability of these genomes has paved the way for high-throughput investigations on genome-wide gene expression and proteomics in vector biology. Such investigations would not have been possible without parallel progress in bioinformatics. It is now necessary to construct specific ontologies that will enable vector biologists to achieve computer-comprehensible annotation of genes and genomes, but also of various experimental, clinical and surveillance data. This will inevitably lead to the enhanced usage of such controlled vocabularies, and to an effort to develop novel ontologies, particularly in the context of disease control.

Mesh:

Year:  2008        PMID: 18440275     DOI: 10.1016/j.pt.2008.03.002

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  7 in total

1.  A set of ontologies to drive tools for the control of vector-borne diseases.

Authors:  Pantelis Topalis; Emmanuel Dialynas; Elvira Mitraka; Elena Deligianni; Inga Siden-Kiamos; Christos Louis
Journal:  J Biomed Inform       Date:  2010-04-02       Impact factor: 6.317

2.  Ontology for vector surveillance and management.

Authors:  Saul Lozano-Fuentes; Aritra Bandyopadhyay; Lindsay G Cowell; Albert Goldfain; Lars Eisen
Journal:  J Med Entomol       Date:  2013-01       Impact factor: 2.278

3.  IDOMAL: an ontology for malaria.

Authors:  Pantelis Topalis; Elvira Mitraka; Ioana Bujila; Elena Deligianni; Emmanuel Dialynas; Inga Siden-Kiamos; Marita Troye-Blomberg; Christos Louis
Journal:  Malar J       Date:  2010-08-10       Impact factor: 2.979

4.  VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics.

Authors:  Karine Megy; Scott J Emrich; Daniel Lawson; David Campbell; Emmanuel Dialynas; Daniel S T Hughes; Gautier Koscielny; Christos Louis; Robert M Maccallum; Seth N Redmond; Andrew Sheehan; Pantelis Topalis; Derek Wilson
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

5.  Describing the breakbone fever: IDODEN, an ontology for dengue fever.

Authors:  Elvira Mitraka; Pantelis Topalis; Vicky Dritsou; Emmanuel Dialynas; Christos Louis
Journal:  PLoS Negl Trop Dis       Date:  2015-02-03

6.  VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases.

Authors:  Gloria I Giraldo-Calderón; Scott J Emrich; Robert M MacCallum; Gareth Maslen; Emmanuel Dialynas; Pantelis Topalis; Nicholas Ho; Sandra Gesing; Gregory Madey; Frank H Collins; Daniel Lawson
Journal:  Nucleic Acids Res       Date:  2014-12-15       Impact factor: 16.971

7.  VectorBase: a data resource for invertebrate vector genomics.

Authors:  Daniel Lawson; Peter Arensburger; Peter Atkinson; Nora J Besansky; Robert V Bruggner; Ryan Butler; Kathryn S Campbell; George K Christophides; Scott Christley; Emmanuel Dialynas; Martin Hammond; Catherine A Hill; Nathan Konopinski; Neil F Lobo; Robert M MacCallum; Greg Madey; Karine Megy; Jason Meyer; Seth Redmond; David W Severson; Eric O Stinson; Pantelis Topalis; Ewan Birney; William M Gelbart; Fotis C Kafatos; Christos Louis; Frank H Collins
Journal:  Nucleic Acids Res       Date:  2008-11-21       Impact factor: 16.971

  7 in total

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