| Literature DB >> 18439249 |
Rattanaphone Phetsouvanh1, Masami Nakatsu, Eiji Arakawa, Viengmone Davong, Manivanh Vongsouvath, Olay Lattana, Catrin E Moore, Satoshi Nakamura, Paul N Newton.
Abstract
BACKGROUND: Human infections with non-O1, non-O139 V. cholerae have been described from Laos. Elsewhere, non cholera-toxin producing, non-O1, non-O139 V. cholerae have been described from blood cultures and ascitic fluid, although they are exceedingly rare isolates. CASEEntities:
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Year: 2008 PMID: 18439249 PMCID: PMC2373308 DOI: 10.1186/1476-0711-7-10
Source DB: PubMed Journal: Ann Clin Microbiol Antimicrob ISSN: 1476-0711 Impact factor: 3.944
Summary of the gene regions detected in the patients isolates from ascitic fluid and blood culture compared to the 569B reference organism and serogroup O21 609-68 and 418-03 strains kindly provided by the National Institute of Infectious Diseases, Tokyo, Japan.
| Gene | Primer | Product length/bp | Inaba 569B | 609-68 India | 418-03 USA | Patient's ascitic fluid | Patient's blood culture |
| ompW 1/2 | 588 | + | + | + | + | + | |
| ompW1/4 | 304 | + | + | + | + | + | |
| ompW 2/4 | 336 | + | + | + | + | + | |
| ompW F/R | 373 | + | - | - | - | - | |
| Tox F/R | 337 | + | + | + | + | + | |
| ctxA F/R | 354 | + | - | - | - | - | |
| ompU F/R | 283 | + | - | - | - | - | |
| ompK F/R | 310 | + | - | - | - | - | |
| TCP F/R | 265 | + | - | - | - | - |
Notes. Amplification by was done in a 25 μl reaction mixture containing 3 μl of template DNA, 200 μM of each dNTP, 1X reaction buffer, 1.25 units of Taq polymerase (TaKaRa Ex-Taq), and 0.5 μM of each primers. The initial amplification conditions were one cycle at 95°C for 7 minutes, 35 cycles at 95°C for 30 seconds. 55°C for 30 seconds, and 72°C for 30 seconds; and elongation step of 72°C for 5 minutes. Nested PCR was performed with the same method except that the annealing temperature was 60°C and the template was 2 μl of the first PCR product. Electrophoresis was performed on a 1.8% agarose gel.
Primers and primer sequences. From reference [16] and this paper
| Primer name | Sequence | Accession number if designed in this experiment |
| ompW-1 | CACCAAGAAGGTGACTTTATTGTG | [16] |
| ompW-2 | GAACTTATAACCACCCGCG | [16] |
| ompW-3 | CCACCTACCTTTATGGTCC | [16] |
| ompW-4 | GGAAAGTCGAATTAGCTTCACC | [16] |
| ompW-F | GTTTTTGAAGTCCTCGCTGCT | NC_002506 |
| ompW-R | GCATCTGCACCTGCTTTGTA | NC_002506 |
| ctxA-F | TCAGACGGGATTTGTTAGGC | AF463400 |
| ctxA-R | CCTGCCAATCCATAACCATC | AF463400 |
| toxR-F | GATTAGGCAGCAACGAAAGC | M21249 |
| toxR-R | GATGAAGGCACACTGCTTGA | M21249 |
| ompU-F | GCTGTAGCAGACCGTGTTGA | NC_002505 |
| ompU-R | GGTTTTCCATGCGGTAAGAA | NC_002505 |
| ompK-F | GCAACGAACAAAAGCAGTGA | NC_002505 |
| ompK-R | ACCAGTTGGTCGAGATTTGG | NC_002505 |
| TCP-F | TGGGCAGATATTTGTGGTGA | NC_002505 |
| TCP-R | TTTCTGCAACTCCTGTCAACAT | NC_002505 |
Figure 1Agarose gel electrophoresis analysis of . Lane M is the 100 bp lambda ladder marker (Toyobo, Japan); lanes 1–4 are ompW (the primer pairs 1/2, 1/4, 2/4, F/R) and lanes 5–9 are toxR, ctxA, ompU, ompK and TCP.
Figure 2Scanning electron micrograph of an environmental V. cholerae isolate from USA (418-03).
Figure 3Scanning electron micrograph of a human V. cholerae isolate from India (109-68).
Figure 4Scanning electron micrograph of V. cholerae organisms cultured from the patient, demonstrating the absence of flagellae.
Primers used for PCR of the flaA gene of V. cholerae (designed using V. cholerae accession number AF007121 and the JustBio primer soft software)
| Primer name | Sequence | Product length (bp) |
| FlaA_F1 | GACCGCACAACGTTATCTGA | 321 |
| FlaA_R1 | AGTGCCACCGACTCTTCATT | |
| FlaA_F2 | AACCGTATCGCTGAAACCAC | 323 |
| FlaA_R2 | TCCGTTTGACCGTTGATGTA | |
| FlaA_F3 | AAGCTTCGGTTGACCAAGAA | 338 |
| FlaA_R3 | TCCTTCGCAAAATCCGTATC |