Literature DB >> 18430956

Functional conservation of the yeast and Arabidopsis RAD54-like genes.

Michael Klutstein1, Hezi Shaked, Amir Sherman, Naomi Avivi-Ragolsky, Efrat Shema, Drora Zenvirth, Avraham A Levy, Giora Simchen.   

Abstract

The Saccharomyces cerevisiae RAD54 gene has critical roles in DNA double-strand break repair, homologous recombination, and gene targeting. Previous results show that the yeast gene enhances gene targeting when expressed in Arabidopsis thaliana. In this work we address the trans-species compatibility of Rad54 functions. We show that overexpression of yeast RAD54 in Arabidopsis enhances DNA damage resistance severalfold. Thus, the yeast gene is active in the Arabidopsis homologous-recombination repair system. Moreover, we have identified an A. thaliana ortholog of yeast RAD54, named AtRAD54. This gene, with close sequence similarity to RAD54, complements methylmethane sulfonate (MMS) sensitivity but not UV sensitivity or gene targeting defects of rad54Delta mutant yeast cells. Overexpression of AtRAD54 in Arabidopsis leads to enhanced resistance to DNA damage. This gene's assignment as a RAD54 ortholog is further supported by the interaction of AtRad54 with AtRad51 and the interactions between alien proteins (i.e., yeast Rad54 with AtRAD51 and yeast Rad51 with AtRad54) in a yeast two-hybrid experiment. These interactions hint at the molecular nature of this interkingdom complementation, although the stronger effect of the yeast Rad54 in plants than AtRad54 in yeast might be explained by an ability of the Rad54 protein to act alone, independently of its interaction with Rad51.

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Year:  2008        PMID: 18430956      PMCID: PMC2323823          DOI: 10.1534/genetics.108.086777

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  33 in total

1.  Sister chromatid-based DNA repair is mediated by RAD54, not by DMC1 or TID1.

Authors:  A Arbel; D Zenvirth; G Simchen
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

2.  A novel function of Rad54 protein. Stabilization of the Rad51 nucleoprotein filament.

Authors:  Alexander V Mazin; Andrei A Alexeev; Stephen C Kowalczykowski
Journal:  J Biol Chem       Date:  2003-02-03       Impact factor: 5.157

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Authors:  F Sherman
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

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Authors:  R Rothstein
Journal:  Methods Enzymol       Date:  1991       Impact factor: 1.600

5.  The Drosophila melanogaster DmRAD54 gene plays a crucial role in double-strand break repair after P-element excision and acts synergistically with Ku70 in the repair of X-ray damage.

Authors:  R Kooistra; A Pastink; J B Zonneveld; P H Lohman; J C Eeken
Journal:  Mol Cell Biol       Date:  1999-09       Impact factor: 4.272

6.  Meiotic cells monitor the status of the interhomolog recombination complex.

Authors:  L Xu; B M Weiner; N Kleckner
Journal:  Genes Dev       Date:  1997-01-01       Impact factor: 11.361

7.  Rad54 protein promotes branch migration of Holliday junctions.

Authors:  Dmitry V Bugreev; Olga M Mazina; Alexander V Mazin
Journal:  Nature       Date:  2006-07-02       Impact factor: 49.962

8.  Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament.

Authors:  Andrei Alexeev; Alexander Mazin; Stephen C Kowalczykowski
Journal:  Nat Struct Biol       Date:  2003-03

Review 9.  Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions.

Authors:  J A Eisen; K S Sweder; P C Hanawalt
Journal:  Nucleic Acids Res       Date:  1995-07-25       Impact factor: 16.971

Review 10.  The SWI-SNF complex: a chromatin remodeling machine?

Authors:  C L Peterson; J W Tamkun
Journal:  Trends Biochem Sci       Date:  1995-04       Impact factor: 13.807

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  9 in total

1.  Rad54 is not essential for any geminiviral replication mode in planta.

Authors:  Kathrin S Richter; Lukas Ende; Holger Jeske
Journal:  Plant Mol Biol       Date:  2014-12-10       Impact factor: 4.076

Review 2.  DNA Damage Repair in the Context of Plant Chromatin.

Authors:  Mattia Donà; Ortrun Mittelsten Scheid
Journal:  Plant Physiol       Date:  2015-06-18       Impact factor: 8.340

3.  Downward causation by information control in micro-organisms.

Authors:  Luc Jaeger; Erin R Calkins
Journal:  Interface Focus       Date:  2011-09-29       Impact factor: 3.906

4.  Sgs1 and Exo1 suppress targeted chromosome duplication during ends-in and ends-out gene targeting.

Authors:  Anamarija Štafa; Marina Miklenić; Bojan Zunar; Berislav Lisnić; Lorraine S Symington; Ivan-Krešimir Svetec
Journal:  DNA Repair (Amst)       Date:  2014-08-02

5.  The Inhibitor Endosidin 4 Targets SEC7 Domain-Type ARF GTPase Exchange Factors and Interferes with Subcellular Trafficking in Eukaryotes.

Authors:  Urszula Kania; Tomasz Nodzyński; Qing Lu; Glenn R Hicks; Wim Nerinckx; Kiril Mishev; François Peurois; Jacqueline Cherfils; Riet De Rycke; Peter Grones; Stéphanie Robert; Eugenia Russinova; Jiří Friml
Journal:  Plant Cell       Date:  2018-07-17       Impact factor: 11.277

Review 6.  Challenges and Perspectives in Homology-Directed Gene Targeting in Monocot Plants.

Authors:  Tien Van Vu; Yeon Woo Sung; Jihae Kim; Duong Thi Hai Doan; Mil Thi Tran; Jae-Yean Kim
Journal:  Rice (N Y)       Date:  2019-12-19       Impact factor: 4.783

7.  GIP1 and GIP2 Contribute to the Maintenance of Genome Stability at the Nuclear Periphery.

Authors:  Gaurav Singh; Morgane Batzenschlager; Denisa Tomkova; Etienne Herzog; Elise Hoffmann; Guy Houlné; Anne-Catherine Schmit; Alexandre Berr; Marie-Edith Chabouté
Journal:  Front Plant Sci       Date:  2022-01-27       Impact factor: 5.753

8.  Bridge-induced chromosome translocation in yeast relies upon a Rad54/Rdh54-dependent, Pol32-independent pathway.

Authors:  Valentina Tosato; Sabrina Sidari; Carlo V Bruschi
Journal:  PLoS One       Date:  2013-04-17       Impact factor: 3.240

9.  Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation.

Authors:  Flavia Vischi Winck; Flavia Vischi Winck; Samuel Arvidsson; Diego Mauricio Riaño-Pachón; Sabrina Hempel; Aneta Koseska; Zoran Nikoloski; David Alejandro Urbina Gomez; Jens Rupprecht; Bernd Mueller-Roeber
Journal:  PLoS One       Date:  2013-11-01       Impact factor: 3.240

  9 in total

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