Literature DB >> 18428805

Theoretical principles of in vitro selection using combinatorial nucleic acid libraries.

B Vant-Hull1, L Gold, D A Zichi.   

Abstract

A new paradigm for drug discovery and biological research has developed from technologies that integrate combinatorial chemistry with rounds of selection and amplification, a technique called in vitro selection or systematic evolution of ligands by exponential enrichment (SELEX). This overview unit discusses nucleic acid libraries that can be used, affinity probability distributions, an equilibrium model for SELEX, and optimal conditions including concentrations and signal-to-noise ratios.

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Year:  2000        PMID: 18428805     DOI: 10.1002/0471142700.nc0901s00

Source DB:  PubMed          Journal:  Curr Protoc Nucleic Acid Chem        ISSN: 1934-9270


  11 in total

1.  In vitro selection of metal ion-selective DNAzymes.

Authors:  Hannah E Ihms; Yi Lu
Journal:  Methods Mol Biol       Date:  2012

2.  Analysis of in vitro evolution reveals the underlying distribution of catalytic activity among random sequences.

Authors:  Abe Pressman; Janina E Moretti; Gregory W Campbell; Ulrich F Müller; Irene A Chen
Journal:  Nucleic Acids Res       Date:  2017-08-21       Impact factor: 16.971

3.  Aptamer-Based Proteomic Profiling Reveals Novel Candidate Biomarkers and Pathways in Cardiovascular Disease.

Authors:  Debby Ngo; Sumita Sinha; Dongxiao Shen; Eric W Kuhn; Michelle J Keyes; Xu Shi; Mark D Benson; John F O'Sullivan; Hasmik Keshishian; Laurie A Farrell; Michael A Fifer; Ramachandran S Vasan; Marc S Sabatine; Martin G Larson; Steven A Carr; Thomas J Wang; Robert E Gerszten
Journal:  Circulation       Date:  2016-07-26       Impact factor: 29.690

4.  Aptamer Base: a collaborative knowledge base to describe aptamers and SELEX experiments.

Authors:  Jose Cruz-Toledo; Maureen McKeague; Xueru Zhang; Amanda Giamberardino; Erin McConnell; Tariq Francis; Maria C DeRosa; Michel Dumontier
Journal:  Database (Oxford)       Date:  2012-03-20       Impact factor: 3.451

5.  Influence of target concentration and background binding on in vitro selection of affinity reagents.

Authors:  Jinpeng Wang; Joseph F Rudzinski; Qiang Gong; H Tom Soh; Paul J Atzberger
Journal:  PLoS One       Date:  2012-08-28       Impact factor: 3.240

6.  Challenges and opportunities for small molecule aptamer development.

Authors:  Maureen McKeague; Maria C Derosa
Journal:  J Nucleic Acids       Date:  2012-10-24

7.  The effects of α-lipoic acid against testicular ischemia-reperfusion injury in Rats.

Authors:  Seda Ozbal; Bekir Ugur Ergur; Guven Erbil; Isıl Tekmen; Alper Bagrıyanık; Zahide Cavdar
Journal:  ScientificWorldJournal       Date:  2012-10-24

8.  Development of an aptamer-based concentration method for the detection of Trypanosoma cruzi in blood.

Authors:  Rana Nagarkatti; Vaibhav Bist; Sirena Sun; Fernanda Fortes de Araujo; Hira L Nakhasi; Alain Debrabant
Journal:  PLoS One       Date:  2012-08-22       Impact factor: 3.240

9.  Density-dependent cooperative non-specific binding in solid-phase SELEX affinity selection.

Authors:  Abdullah Ozer; Brian S White; John T Lis; David Shalloway
Journal:  Nucleic Acids Res       Date:  2013-06-03       Impact factor: 16.971

Review 10.  Selection platforms for directed evolution in synthetic biology.

Authors:  Pedro A G Tizei; Eszter Csibra; Leticia Torres; Vitor B Pinheiro
Journal:  Biochem Soc Trans       Date:  2016-08-15       Impact factor: 5.407

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