Literature DB >> 18428784

Identifying structural noncoding RNAs using RNAz.

Stefan Washietl1, Ivo L Hofacker.   

Abstract

The functions of many noncoding RNAs and cis-acting regulatory elements of mRNAs depend on a defined RNA secondary structure. RNAz predicts such functional RNA structures on the basis of thermodynamic stability and evolutionary conservation of homologous sequences. It can be used to efficiently filter multiple alignments for noncoding RNA candidates in genomic screens. Copyright 2007 by John Wiley & Sons, Inc.

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Year:  2007        PMID： 18428784     DOI： 10.1002/0471250953.bi1207s19

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN： 1934-3396


  8 in total

1.  Mapping the RNA structural landscape of viral genomes.

Authors:  Ryan J Andrews; Levi Baber; Walter N Moss
Journal:  Methods       Date:  2019-11-08       Impact factor: 3.608

Review 2.  Computational approaches for the discovery of splicing regulatory RNA structures.

Authors:  Ryan J Andrews; Walter N Moss
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-04-29       Impact factor: 4.490

3.  Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation.

Authors:  Tim R Mercer; Irfan A Qureshi; Solen Gokhan; Marcel E Dinger; Guangyu Li; John S Mattick; Mark F Mehler
Journal:  BMC Neurosci       Date:  2010-02-05       Impact factor: 3.288

Review 4.  In silico discovery and modeling of non-coding RNA structure in viruses.

Authors:  Walter N Moss; Joan A Steitz
Journal:  Methods       Date:  2015-06-23       Impact factor: 3.608

Review 5.  From structure prediction to genomic screens for novel non-coding RNAs.

Authors:  Jan Gorodkin; Ivo L Hofacker
Journal:  PLoS Comput Biol       Date:  2011-08-04       Impact factor: 4.475

6.  ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs.

Authors:  Christina Otto; Mathias Möhl; Steffen Heyne; Mika Amit; Gad M Landau; Rolf Backofen; Sebastian Will
Journal:  BMC Bioinformatics       Date:  2014-12-31       Impact factor: 3.169

7.  RNAStructuromeDB: A genome-wide database for RNA structural inference.

Authors:  Ryan J Andrews; Levi Baber; Walter N Moss
Journal:  Sci Rep       Date:  2017-12-08       Impact factor: 4.379

8.  A map of the SARS-CoV-2 RNA structurome.

Authors:  Ryan J Andrews; Collin A O'Leary; Van S Tompkins; Jake M Peterson; Hafeez S Haniff; Christopher Williams; Matthew D Disney; Walter N Moss
Journal:  NAR Genom Bioinform       Date:  2021-05-22
  8 in total

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