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Literature DB >> 18428750

Representing structural information with RasMol.

Abstract

This unit describes the use of RasMol, a popular interactive molecular graphics program, for the display of biomolecular structures. The unit begins with a general guide to obtaining molecular coordinates from the Protein Data Bank and displaying them with RasMol, and then describes several molecular representations that are useful for different applications, along with methods for ensuring that one is viewing the appropriate biological unit and some ideas for customizing one's molecular graphics session.

Entities: Chemical

Mesh：

Substances：
Proteins

Year: 2005 PMID： 18428750 DOI： 10.1002/0471250953.bi0504s11

Source DB: PubMed Journal: Curr Protoc Bioinformatics ISSN： 1934-3396

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Cited

10 in total

1. Dystrophin hydrophobic regions in the pathogenesis of Duchenne and Becker muscular dystrophies.

Authors: Yingyin Liang; Songlin Chen; Jianzong Zhu; Xiangxue Zhou; Chen Yang; Lu Yao; Cheng Zhang
Journal: Bosn J Basic Med Sci Date: 2015-05-20 Impact factor: 3.363

2. Comparative analysis of binding affinities between styrene and mammalian CYP2E1 by bioinformatics approaches.

Authors: Bing Wu; Jie Sun; Shu-Pei Cheng; Ji-Dong Gu; Ai-Min Li; Xu-Xiang Zhang
Journal: Ecotoxicology Date: 2011-03-22 Impact factor: 2.823

Review 3. Exploring New Routes for Genetic Resistances to Potyviruses: The Case of the Arabidopsis thaliana Phosphoglycerates Kinases (PGK) Metabolic Enzymes.

Authors: Mamoudou Diop; Jean-Luc Gallois
Journal: Viruses Date: 2022-06-08 Impact factor: 5.818

4. Structural and Molecular Docking Analytical Studies of the Predicted Ligand Binding Sites of Cadherin-1 in Cancer Prognostics.

Authors: Olalekan Olanrewaju Bakare; Adewale Oluwaseun Fadaka; Marshall Keyster; Ashley Pretorius
Journal: Adv Appl Bioinform Chem Date: 2020-07-28

5. Amino Acid Mutations in Hemagglutinin-Neuraminidase Enhance the Virulence and Pathogenicity of the Genotype III Newcastle Disease Vaccine Strain After Intravenous Inoculation.

Authors: Xiaolong Lu; Xiaowen Liu; Qingqing Song; Xiaoquan Wang; Shunlin Hu; Xiufan Liu
Journal: Front Vet Sci Date: 2022-05-27

Representing structural information with RasMol.

1. Dystrophin hydrophobic regions in the pathogenesis of Duchenne and Becker muscular dystrophies.

2. Comparative analysis of binding affinities between styrene and mammalian CYP2E1 by bioinformatics approaches.

Review 3. Exploring New Routes for Genetic Resistances to Potyviruses: The Case of the Arabidopsis thaliana Phosphoglycerates Kinases (PGK) Metabolic Enzymes.

4. Structural and Molecular Docking Analytical Studies of the Predicted Ligand Binding Sites of Cadherin-1 in Cancer Prognostics.

5. Amino Acid Mutations in Hemagglutinin-Neuraminidase Enhance the Virulence and Pathogenicity of the Genotype III Newcastle Disease Vaccine Strain After Intravenous Inoculation.

6. A survey of educational uses of molecular visualization freeware.

7. 3DSwap: curated knowledgebase of proteins involved in 3D domain swapping.

Review 8. Building a virtual ligand screening pipeline using free software: a survey.

9. Chemistry in second life.

10. Patterns of positive selection of the myogenic regulatory factor gene family in vertebrates.