Literature DB >> 18428727

FAMS and FAMSBASE for protein structure.

Hideaki Umeyama1, Mitsuo Iwadate.   

Abstract

The computer program FAMS (Full Automatic Modeling System) performs homology modeling of protein structures by means of an algorithm consisting of database searches and simulated annealing. FAMS produces a model in which the torsion angles of the backbone and sidechains are highly accurate. The operations of the FAMS algorithm are fully automated, and, therefore, special knowledge, techniques or experience are not required in order to obtain a biologically worthwhile protein structure.

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Year:  2004        PMID： 18428727     DOI： 10.1002/0471250953.bi0502s04

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN： 1934-3396


  7 in total

1.  Principal component analysis-based unsupervised feature extraction applied to in silico drug discovery for posttraumatic stress disorder-mediated heart disease.

Authors:  Y-h Taguchi; Mitsuo Iwadate; Hideaki Umeyama
Journal:  BMC Bioinformatics       Date:  2015-04-30       Impact factor: 3.169

2.  Genes associated with genotype-specific DNA methylation in squamous cell carcinoma as candidate drug targets.

Authors:  Ryoichi Kinoshita; Mitsuo Iwadate; Hideaki Umeyama; Y-h Taguchi
Journal:  BMC Syst Biol       Date:  2014-01-24

3.  TINAGL1 and B3GALNT1 are potential therapy target genes to suppress metastasis in non-small cell lung cancer.

Authors:  Hideaki Umeyama; Mitsuo Iwadate; Y-h Taguchi
Journal:  BMC Genomics       Date:  2014-12-08       Impact factor: 3.969

4.  An iterative compound screening contest method for identifying target protein inhibitors using the tyrosine-protein kinase Yes.

Authors:  Shuntaro Chiba; Takashi Ishida; Kazuyoshi Ikeda; Masahiro Mochizuki; Reiji Teramoto; Y-H Taguchi; Mitsuo Iwadate; Hideaki Umeyama; Chandrasekaran Ramakrishnan; A Mary Thangakani; D Velmurugan; M Michael Gromiha; Tatsuya Okuno; Koya Kato; Shintaro Minami; George Chikenji; Shogo D Suzuki; Keisuke Yanagisawa; Woong-Hee Shin; Daisuke Kihara; Kazuki Z Yamamoto; Yoshitaka Moriwaki; Nobuaki Yasuo; Ryunosuke Yoshino; Sergey Zozulya; Petro Borysko; Roman Stavniichuk; Teruki Honma; Takatsugu Hirokawa; Yutaka Akiyama; Masakazu Sekijima
Journal:  Sci Rep       Date:  2017-09-20       Impact factor: 4.379

5.  Chlamydomonas reinhardtii tubulin-gene disruptants for efficient isolation of strains bearing tubulin mutations.

Authors:  Takako Kato-Minoura; Yutaro Ogiwara; Takashi Yamano; Hideya Fukuzawa; Ritsu Kamiya
Journal:  PLoS One       Date:  2020-11-23       Impact factor: 3.240

6.  Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target.

Authors:  Shuntaro Chiba; Kazuyoshi Ikeda; Takashi Ishida; M Michael Gromiha; Y-H Taguchi; Mitsuo Iwadate; Hideaki Umeyama; Kun-Yi Hsin; Hiroaki Kitano; Kazuki Yamamoto; Nobuyoshi Sugaya; Koya Kato; Tatsuya Okuno; George Chikenji; Masahiro Mochizuki; Nobuaki Yasuo; Ryunosuke Yoshino; Keisuke Yanagisawa; Tomohiro Ban; Reiji Teramoto; Chandrasekaran Ramakrishnan; A Mary Thangakani; D Velmurugan; Philip Prathipati; Junichi Ito; Yuko Tsuchiya; Kenji Mizuguchi; Teruki Honma; Takatsugu Hirokawa; Yutaka Akiyama; Masakazu Sekijima
Journal:  Sci Rep       Date:  2015-11-26       Impact factor: 4.379

7.  A prospective compound screening contest identified broader inhibitors for Sirtuin 1.

Authors:  Shuntaro Chiba; Masahito Ohue; Anastasiia Gryniukova; Petro Borysko; Sergey Zozulya; Nobuaki Yasuo; Ryunosuke Yoshino; Kazuyoshi Ikeda; Woong-Hee Shin; Daisuke Kihara; Mitsuo Iwadate; Hideaki Umeyama; Takaaki Ichikawa; Reiji Teramoto; Kun-Yi Hsin; Vipul Gupta; Hiroaki Kitano; Mika Sakamoto; Akiko Higuchi; Nobuaki Miura; Kei Yura; Masahiro Mochizuki; Chandrasekaran Ramakrishnan; A Mary Thangakani; D Velmurugan; M Michael Gromiha; Itsuo Nakane; Nanako Uchida; Hayase Hakariya; Modong Tan; Hironori K Nakamura; Shogo D Suzuki; Tomoki Ito; Masahiro Kawatani; Kentaroh Kudoh; Sakurako Takashina; Kazuki Z Yamamoto; Yoshitaka Moriwaki; Keita Oda; Daisuke Kobayashi; Tatsuya Okuno; Shintaro Minami; George Chikenji; Philip Prathipati; Chioko Nagao; Attayeb Mohsen; Mari Ito; Kenji Mizuguchi; Teruki Honma; Takashi Ishida; Takatsugu Hirokawa; Yutaka Akiyama; Masakazu Sekijima
Journal:  Sci Rep       Date:  2019-12-20       Impact factor: 4.379
  7 in total

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