Literature DB >> 18428689

Sequence file format conversion with command-line readseq.

Don Gilbert1.   

Abstract

One of the major challenges in using bioinformatics software is that there are a wide variety of sequence formats, e.g., GenBank, EMBL, and FASTA. It is often the case that a sequence or a set of sequences is in one format but is needed in another. This unit offers a solution to this problem--Readseq. Readseq is a program that can read and write 18 different formats.

Mesh：

Year:  2003        PMID： 18428689     DOI： 10.1002/0471250953.bia01es00

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN： 1934-3396


  20 in total

1.  A phylogenetic analysis of normal modes evolution in enzymes and its relationship to enzyme function.

Authors:  Jason Lai; Jing Jin; Jan Kubelka; David A Liberles
Journal:  J Mol Biol       Date:  2012-05-28       Impact factor: 5.469

2.  SeqMaT: A sequence manipulation tool for phylogenetic analysis.

Authors:  Pavan Kumar Attaluri; Mary C Christman; Zhengxin Chen; Guoqing Lu
Journal:  Bioinformation       Date:  2011-02-07

3.  Genome-wide analysis of fluoride exporter genes in plants.

Authors:  Samridhi Agarwal; Preetom Regon; Mehzabin Rehman; Bhaben Tanti; Sanjib Kumar Panda
Journal:  3 Biotech       Date:  2021-02-12       Impact factor: 2.406

4.  Protein sequence alignment analysis by local covariation: coevolution statistics detect benchmark alignment errors.

Authors:  Russell J Dickson; Gregory B Gloor
Journal:  PLoS One       Date:  2012-06-08       Impact factor: 3.240

5.  Seqcrawler: biological data indexing and browsing platform.

Authors:  Olivier Sallou; Anthony Bretaudeau; Aurelien Roult
Journal:  BMC Bioinformatics       Date:  2012-07-24       Impact factor: 3.169

6.  JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes.

Authors:  Chunguang Liang; Alexander Schmid; María José López-Sánchez; Andres Moya; Roy Gross; Jörg Bernhardt; Thomas Dandekar
Journal:  BMC Bioinformatics       Date:  2009-11-29       Impact factor: 3.169

7.  eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.

Authors:  J Muller; D Szklarczyk; P Julien; I Letunic; A Roth; M Kuhn; S Powell; C von Mering; T Doerks; L J Jensen; P Bork
Journal:  Nucleic Acids Res       Date:  2009-11-09       Impact factor: 16.971

8.  MAPI: a software framework for distributed biomedical applications.

Authors:  Johan Karlsson; Oswaldo Trelles
Journal:  J Biomed Semantics       Date:  2013-01-11

9.  Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community.

Authors:  Brett E Pickett; Douglas S Greer; Yun Zhang; Lucy Stewart; Liwei Zhou; Guangyu Sun; Zhiping Gu; Sanjeev Kumar; Sam Zaremba; Christopher N Larsen; Wei Jen; Edward B Klem; Richard H Scheuermann
Journal:  Viruses       Date:  2012-11-19       Impact factor: 5.048

10.  Phylogenetic reconstruction in the order Nymphaeales: ITS2 secondary structure analysis and in silico testing of maturase k (matK) as a potential marker for DNA bar coding.

Authors:  Devendra Kumar Biswal; Manish Debnath; Shakti Kumar; Pramod Tandon
Journal:  BMC Bioinformatics       Date:  2012-12-13       Impact factor: 3.169
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.