Literature DB >> 18428686

The InterPro database and tools for protein domain analysis.

Nicola J Mulder1, Rolf Apweiler.   

Abstract

InterPro provides a one-stop shop for protein-sequence classification, freeing the user from having to visit multiple databases separately and rationalize the different results in varying formats. This unit describes how to submit a sequence to InterProScan via a Web server. It also provides instructions for installing and running InterProScan locally. In addition, details on browsing InterPro families and domains of interest using the InterPro Web and sequence retrieval system (SRS) are provided to show users how to get the most from the resource.

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Year:  2008        PMID： 18428686     DOI： 10.1002/0471250953.bi0207s21

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN： 1934-3396


  36 in total

1.  Prioritization of candidate genes for attention deficit hyperactivity disorder by computational analysis of multiple data sources.

Authors:  Suhua Chang; Weina Zhang; Lei Gao; Jing Wang
Journal:  Protein Cell       Date:  2012-07-10       Impact factor: 14.870

2.  Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development.

Authors:  Deepak Bandyopadhyay; Jun Huan; Jan Prins; Jack Snoeyink; Wei Wang; Alexander Tropsha
Journal:  J Comput Aided Mol Des       Date:  2009-06-20       Impact factor: 3.686

3.  Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice.

Authors:  Haiyan Ye; Hao Du; Ning Tang; Xianghua Li; Lizhong Xiong
Journal:  Plant Mol Biol       Date:  2009-07-18       Impact factor: 4.076

Review 4.  Genomics and bioinformatics resources for crop improvement.

Authors:  Keiichi Mochida; Kazuo Shinozaki
Journal:  Plant Cell Physiol       Date:  2010-03-05       Impact factor: 4.927

5.  Identification of wild soybean (Glycine soja) TIFY family genes and their expression profiling analysis under bicarbonate stress.

Authors:  Dan Zhu; Xi Bai; Xiao Luo; Qin Chen; Hua Cai; Wei Ji; Yanming Zhu
Journal:  Plant Cell Rep       Date:  2012-10-23       Impact factor: 4.570

6.  Predicting Type 1 Diabetes Candidate Genes using Human Protein-Protein Interaction Networks.

Authors:  Shouguo Gao; Xujing Wang
Journal:  J Comput Sci Syst Biol       Date:  2009-04-01

7.  Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes in Drosophila.

Authors:  Sebastian Kurscheid; Ala E Lew-Tabor; Manuel Rodriguez Valle; Anthea G Bruyeres; Vivienne J Doogan; Ulrike G Munderloh; Felix D Guerrero; Roberto A Barrero; Matthew I Bellgard
Journal:  BMC Mol Biol       Date:  2009-03-26       Impact factor: 2.946

8.  STIFDB-Arabidopsis Stress Responsive Transcription Factor DataBase.

Authors:  K Shameer; S Ambika; Susan Mary Varghese; N Karaba; M Udayakumar; R Sowdhamini
Journal:  Int J Plant Genomics       Date:  2009-10-18

9.  Why is the correlation between gene importance and gene evolutionary rate so weak?

Authors:  Zhi Wang; Jianzhi Zhang
Journal:  PLoS Genet       Date:  2009-01-09       Impact factor: 5.917

10.  The Protein Model Portal.

Authors:  Konstantin Arnold; Florian Kiefer; Jürgen Kopp; James N D Battey; Michael Podvinec; John D Westbrook; Helen M Berman; Lorenza Bordoli; Torsten Schwede
Journal:  J Struct Funct Genomics       Date:  2008-11-27
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