Literature DB >> 18428424

Genotyping using the TaqMan assay.

Lester Hui1, Terrye DelMonte, Koustubh Ranade.   

Abstract

The 5'-nuclease allelic discrimination assay, or TaqMan assay, is a PCR-based assay for genotyping single nucleotide polymorphisms (SNPs). The region flanking the SNP is amplified in the presence of two allele-specific fluorescent probes. The probes do not fluoresce in solution because of a quencher at the 3' end. The presence of two probes allows the detection of both alleles in a single tube. Moreover, because probes are included in the PCR, genotypes are determined without any post-PCR processing, a feature that is unavailable with most other genotyping methods. This unit describes probe and primer design and PCR conditions. Copyright 2008 by John Wiley & Sons, Inc.

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Year:  2008        PMID: 18428424     DOI: 10.1002/0471142905.hg0210s56

Source DB:  PubMed          Journal:  Curr Protoc Hum Genet        ISSN: 1934-8258


  20 in total

1.  Effects of SLC2A9 variants on uric acid levels in a Korean population.

Authors:  Jae Woong Sull; Eun Jung Park; Myoungsook Lee; Sun Ha Jee
Journal:  Rheumatol Int       Date:  2012-01-03       Impact factor: 2.631

2.  A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits.

Authors:  Yoon Shin Cho; Min Jin Go; Young Jin Kim; Jee Yeon Heo; Ji Hee Oh; Hyo-Jeong Ban; Dankyu Yoon; Mi Hee Lee; Dong-Joon Kim; Miey Park; Seung-Hun Cha; Jun-Woo Kim; Bok-Ghee Han; Haesook Min; Younjhin Ahn; Man Suk Park; Hye Ree Han; Hye-Yoon Jang; Eun Young Cho; Jong-Eun Lee; Nam H Cho; Chol Shin; Taesung Park; Ji Wan Park; Jong-Keuk Lee; Lon Cardon; Geraldine Clarke; Mark I McCarthy; Jong-Young Lee; Jong-Koo Lee; Bermseok Oh; Hyung-Lae Kim
Journal:  Nat Genet       Date:  2009-04-26       Impact factor: 38.330

3.  High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing.

Authors:  Sanzhen Liu; Hsin D Chen; Irina Makarevitch; Rebecca Shirmer; Scott J Emrich; Charles R Dietrich; W Brad Barbazuk; Nathan M Springer; Patrick S Schnable
Journal:  Genetics       Date:  2009-11-02       Impact factor: 4.562

4.  Setting up a probe based, closed tube real-time PCR assay for focused detection of variable sequence alterations.

Authors:  Péter Becságh; Orsolya Szakács
Journal:  Pathol Oncol Res       Date:  2014-03-22       Impact factor: 3.201

5.  Selected polymorphisms in sex hormone-related genes, circulating sex hormones and risk of endometrial cancer.

Authors:  Eva Lundin; Isaac Wirgin; Annekatrin Lukanova; Yelena Afanasyeva; Vittorio Krogh; Tomas Axelsson; Kari Hemminki; Tess V Clendenen; Alan A Arslan; Nina Ohlson; Sabina Sieri; Nirmal Roy; Karen L Koenig; Annika Idahl; Franco Berrino; Paolo Toniolo; Göran Hallmans; Asta Försti; Paola Muti; Per Lenner; Roy E Shore; Anne Zeleniuch-Jacquotte
Journal:  Cancer Epidemiol       Date:  2012-05-25       Impact factor: 2.984

6.  Role of Genetic Variations in CDK2, CCNE1 and p27KIP1 in Prostate Cancer.

Authors:  Márk Híveš; Jana Jurečeková; Ján Kliment; Marián Grendár; Peter Kaplán; Róbert Dušenka; Daniel Evin; Marta Vilčková; Klaudia Híveš Holečková; Monika Kmeťová Sivoňová
Journal:  Cancer Genomics Proteomics       Date:  2022 May-Jun       Impact factor: 4.069

7.  Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm.

Authors:  Cheng-Hong Yang; Yu-Huei Cheng; Li-Yeh Chuang; Hsueh-Wei Chang
Journal:  BMC Bioinformatics       Date:  2010-10-13       Impact factor: 3.169

8.  Replication of genetic effects of MC4R polymorphisms on body mass index in a Korean population.

Authors:  Jae Woong Sull; Myoungsook Lee; Sun Ha Jee
Journal:  Endocrine       Date:  2013-03-05       Impact factor: 3.633

9.  High-efficiency genotype analysis from formalin-fixed, paraffin-embedded tumor tissues.

Authors:  M J Sikora; J N Thibert; J Salter; M Dowsett; M D Johnson; J M Rae
Journal:  Pharmacogenomics J       Date:  2010-06-15       Impact factor: 3.550

10.  Interaction of 11C-tariquidar and 11C-elacridar with P-glycoprotein and breast cancer resistance protein at the human blood-brain barrier.

Authors:  Martin Bauer; Rudolf Karch; Markus Zeitlinger; Johann Stanek; Cécile Philippe; Wolfgang Wadsak; Markus Mitterhauser; Walter Jäger; Helmuth Haslacher; Markus Müller; Oliver Langer
Journal:  J Nucl Med       Date:  2013-07-05       Impact factor: 10.057

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