Literature DB >> 18421479

Molecular confirmation of the genomic constitution of Douglasdeweya (Triticeae: Poaceae): demonstration of the utility of the 5S rDNA sequence as a tool for haplome identification.

Bernard R Baum1, Douglas A Johnson.   

Abstract

A new genus Douglasdeweya containing the two species, Douglasdeweya deweyi and D. wangii was published in 2005 by Yen et al. based upon the results of cytogenetical and morphological findings. The genome constitution of Douglasdeweya-PPStSt-allowed its segregation from the genus Pseudoroegneria which contains the StSt or StStStSt genomes. Our previous work had demonstrated the utility of using 5S rDNA units, especially the non-transcribed spacer sequence variation, for the resolution of genomes (haplomes) previously established by cytology. Here, we show that sequence analysis of the 5S DNA units from these species strongly supports the proposed species relationships of Yen et al. (Can J Bot 83:413-419, 2005), i.e., the PP genome from Agropyron and the StSt genome from Pseudoroegneria. Analysis of the 5S rDNA units constitutes a powerful tool for genomic research especially in the Triticeae.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18421479     DOI: 10.1007/s00438-008-0338-1

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  16 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  MODELTEST: testing the model of DNA substitution.

Authors:  D Posada; K A Crandall
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

3.  TreeView: an application to display phylogenetic trees on personal computers.

Authors:  R D Page
Journal:  Comput Appl Biosci       Date:  1996-08

4.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  Ancient differentiation of the H and I haplomes in diploid Hordeum species based on 5S rDNA.

Authors:  Bernard R Baum; Douglas A Johnson; Grant L Bailey
Journal:  Genome       Date:  2005-08       Impact factor: 2.166

7.  The 5S rRNA gene units in ancestral two-rowed barley (Hordeum spontaneum C. Koch) and bulbous barley (H. bulbosum L.): sequence analysis and phylogenetic relationships with the 5S rDNA units of cultivated barley (H. vulgare L.).

Authors:  B R Baum; D A Johnson
Journal:  Genome       Date:  1996-02       Impact factor: 2.166

8.  The 5S rRNA gene in sea barley (Hordeum marinum Hudson sensu lato): sequence variation among repeat units and relationship to the X haplome in barley (Hordeum).

Authors:  B R Baum; D A Johnson
Journal:  Genome       Date:  1998-10       Impact factor: 2.166

9.  The molecular diversity of the 5S rRNA gene in barley (Hordeum vulgare).

Authors:  B R Baum; D A Johnson
Journal:  Genome       Date:  1994-12       Impact factor: 2.166

10.  The Genomes of Oryza sativa: a history of duplications.

Authors:  Jun Yu; Jun Wang; Wei Lin; Songgang Li; Heng Li; Jun Zhou; Peixiang Ni; Wei Dong; Songnian Hu; Changqing Zeng; Jianguo Zhang; Yong Zhang; Ruiqiang Li; Zuyuan Xu; Shengting Li; Xianran Li; Hongkun Zheng; Lijuan Cong; Liang Lin; Jianning Yin; Jianing Geng; Guangyuan Li; Jianping Shi; Juan Liu; Hong Lv; Jun Li; Jing Wang; Yajun Deng; Longhua Ran; Xiaoli Shi; Xiyin Wang; Qingfa Wu; Changfeng Li; Xiaoyu Ren; Jingqiang Wang; Xiaoling Wang; Dawei Li; Dongyuan Liu; Xiaowei Zhang; Zhendong Ji; Wenming Zhao; Yongqiao Sun; Zhenpeng Zhang; Jingyue Bao; Yujun Han; Lingli Dong; Jia Ji; Peng Chen; Shuming Wu; Jinsong Liu; Ying Xiao; Dongbo Bu; Jianlong Tan; Li Yang; Chen Ye; Jingfen Zhang; Jingyi Xu; Yan Zhou; Yingpu Yu; Bing Zhang; Shulin Zhuang; Haibin Wei; Bin Liu; Meng Lei; Hong Yu; Yuanzhe Li; Hao Xu; Shulin Wei; Ximiao He; Lijun Fang; Zengjin Zhang; Yunze Zhang; Xiangang Huang; Zhixi Su; Wei Tong; Jinhong Li; Zongzhong Tong; Shuangli Li; Jia Ye; Lishun Wang; Lin Fang; Tingting Lei; Chen Chen; Huan Chen; Zhao Xu; Haihong Li; Haiyan Huang; Feng Zhang; Huayong Xu; Na Li; Caifeng Zhao; Shuting Li; Lijun Dong; Yanqing Huang; Long Li; Yan Xi; Qiuhui Qi; Wenjie Li; Bo Zhang; Wei Hu; Yanling Zhang; Xiangjun Tian; Yongzhi Jiao; Xiaohu Liang; Jiao Jin; Lei Gao; Weimou Zheng; Bailin Hao; Siqi Liu; Wen Wang; Longping Yuan; Mengliang Cao; Jason McDermott; Ram Samudrala; Jian Wang; Gane Ka-Shu Wong; Huanming Yang
Journal:  PLoS Biol       Date:  2005-02-01       Impact factor: 8.029

View more
  4 in total

1.  Diversity within the genus Elymus (Poaceae: Triticeae) II: analyses of variation within 5S nrDNA restrict membership in the genus to species with StH genomes.

Authors:  Bernard R Baum; Tara Edwards; Douglas A Johnson
Journal:  Mol Genet Genomics       Date:  2015-08-12       Impact factor: 3.291

2.  Diversity within the genus Elymus (Poaceae: Triticeae) as investigated by the analysis of the nr5S rDNA variation in species with St and H haplomes.

Authors:  B R Baum; T Edwards; D A Johnson
Journal:  Mol Genet Genomics       Date:  2014-09-24       Impact factor: 3.291

3.  What does the nr5S DNA multigene family tell us about the genomic relationship between Dasypyrum breviaristatum and D. villosum (Triticeae: Poaceae)?

Authors:  B R Baum; T Edwards; D A Johnson
Journal:  Mol Genet Genomics       Date:  2014-03-09       Impact factor: 3.291

4.  Polyploidy origin of wheatgrass Douglasdeweya wangii (Triticeae, Poaceae): evidence from nuclear ribosomal DNA internal transcribed spacer and chloroplast trnL-F sequences.

Authors:  Quanlan Liu; Bao-Rong Lu; Ningning Zhang; Jie Liu; Ying Yu; Hongguang Wang; Xuebing Yan
Journal:  Dev Genes Evol       Date:  2010-09-18       Impact factor: 0.900

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.