Literature DB >> 18413327

Analysing georeferenced population genetics data with Geneland: a new algorithm to deal with null alleles and a friendly graphical user interface.

Gilles Guillot1, Filipe Santos, Arnaud Estoup.   

Abstract

UNLABELLED: We introduce a new algorithm to account for the presence of null alleles in inferences of populations clusters from individual multilocus genetic data. We show by simulations that the presence of null alleles can affect the accuracy of inferences if not properly accounted for and that our algorithm improve signficantly their accuracy. AVAILABILITY: This new algorithm is implemented in the program Geneland. It is freely available under GNU public license as an R package on the Comprehensive R Archive Network. It now includes a fully clickable graphical interface. Informations on how to get the software are available on folk.uio.no/gillesg/Geneland.html

Mesh:

Year:  2008        PMID: 18413327     DOI: 10.1093/bioinformatics/btn136

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  70 in total

1.  Changes in the genetic structure of Aedes aegypti (Diptera: Culicidae) populations in Queensland, Australia, across two seasons: implications for potential mosquito releases.

Authors:  N M Endersby; A A Hoffmann; V L White; S A Ritchie; P H Johnson; A R Weeks
Journal:  J Med Entomol       Date:  2011-09       Impact factor: 2.278

2.  Low genetic diversity and strong population structure shaped by anthropogenic habitat fragmentation in a critically endangered primate, Trachypithecus leucocephalus.

Authors:  W Wang; Y Qiao; S Li; W Pan; M Yao
Journal:  Heredity (Edinb)       Date:  2017-02-15       Impact factor: 3.821

3.  Patterns of population genetic variation in sympatric chiltoniid amphipods within a calcrete aquifer reveal a dynamic subterranean environment.

Authors:  T M Bradford; M Adams; M T Guzik; W F Humphreys; A D Austin; S J B Cooper
Journal:  Heredity (Edinb)       Date:  2013-04-03       Impact factor: 3.821

4.  Genetic diversity and structure of wild populations of Carica papaya in Northern Mesoamerica inferred by nuclear microsatellites and chloroplast markers.

Authors:  Mariana Chávez-Pesqueira; Juan Núñez-Farfán
Journal:  Ann Bot       Date:  2016-10-06       Impact factor: 4.357

5.  More than meets the eye: syntopic and morphologically similar mangrove killifish species show different mating systems and patterns of genetic structure along the Brazilian coast.

Authors:  Waldir M Berbel-Filho; Andrey Tatarenkov; Helder M V Espírito-Santo; Mateus G Lira; Carlos Garcia de Leaniz; Sergio M Q Lima; Sofia Consuegra
Journal:  Heredity (Edinb)       Date:  2020-08-21       Impact factor: 3.821

6.  Increased inbreeding and strong kinship structure in Taxus baccata estimated from both AFLP and SSR data.

Authors:  I J Chybicki; A Oleksa; J Burczyk
Journal:  Heredity (Edinb)       Date:  2011-06-29       Impact factor: 3.821

7.  Assessing the genetic landscape of a contact zone: the case of European hare in northeastern Greece.

Authors:  Aglaia Antoniou; Antonios Magoulas; Petros Platis; Georgios Kotoulas
Journal:  Genetica       Date:  2013-02-05       Impact factor: 1.082

8.  Integrating phylogeography and species distribution models: cryptic distributional responses to past climate change in an endemic rodent from the central Chile hotspot.

Authors:  Pablo Gutiérrez-Tapia; R Eduardo Palma
Journal:  Divers Distrib       Date:  2016-03-23       Impact factor: 5.139

9.  Commensal ecology, urban landscapes, and their influence on the genetic characteristics of city-dwelling Norway rats (Rattus norvegicus).

Authors:  L C Gardner-Santana; D E Norris; C M Fornadel; E R Hinson; S L Klein; G E Glass
Journal:  Mol Ecol       Date:  2009-05-20       Impact factor: 6.185

10.  Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations.

Authors:  Jukka Corander; Pekka Marttinen; Jukka Sirén; Jing Tang
Journal:  BMC Bioinformatics       Date:  2008-12-16       Impact factor: 3.169

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