Literature DB >> 18412331

Functional drift of sequence attributes in the FK506-binding proteins (FKBPs).

Andrzej Galat1.   

Abstract

Diverse members of the FK506-binding proteins (FKBPs) group and their complexes with different macrocyclic ligands of fungal origins such as FK506, rapamycin, ascomycin, and their immunosuppressive and nonimmunosuppressive derivatives display a variety of cellular and biological activities. The functional relatedness of the FKBPs was estimated from the following attributes of their aligned sequences: 1 degrees conservation of the consensus sequence; 2 degrees sequence similarity; 3 degrees pI; 4 degrees hydrophobicity; 5 degrees amino acid hydrophobicity and bulkiness profiles. Analyses of the multiple sequence alignments and intramolecular interaction networks calculated from a series of structures of the FKBPs revealed some variations in the interaction clusters formed by the AA residues that are crucial for sustaining peptidylprolyl cis/trans isomerases (PPIases) activity and binding capacity of the FKBPs. Fine diversification of the sequences of the multiple paralogues and orthologues of the FKBPs encoded in different genomes alter the intramolecular interaction patterns of their structures and allowed them to gain some selectivity in binding to diverse targets (functional drift).

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Year:  2008        PMID: 18412331     DOI: 10.1021/ci700429n

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  17 in total

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Journal:  Curr Opin Pharmacol       Date:  2011-04-21       Impact factor: 5.547

2.  Crystal structure of the three FK506 binding protein domains of wheat FKBP73: evidence for a unique wFK73_2 domain.

Authors:  Tamar Unger; Orly Dym; Shira Albeck; Yossi Jacobovitch; Reut Bernehim; David Marom; Odelia Pisanty; Adina Breiman
Journal:  J Struct Funct Genomics       Date:  2010-03-20

3.  Genome-wide analysis of genes encoding FK506-binding proteins in rice.

Authors:  Peter J Gollan; Mrinal Bhave
Journal:  Plant Mol Biol       Date:  2009-09-19       Impact factor: 4.076

4.  Coupling of Conformational Transitions in the N-terminal Domain of the 51-kDa FK506-binding Protein (FKBP51) Near Its Site of Interaction with the Steroid Receptor Proteins.

Authors:  David M LeMaster; Sourajit M Mustafi; Matthew Brecher; Jing Zhang; Annie Héroux; Hongmin Li; Griselda Hernández
Journal:  J Biol Chem       Date:  2015-05-07       Impact factor: 5.157

5.  Visualizing Secretory Cargo Transport in Budding Yeast.

Authors:  Jason C Casler; Benjamin S Glick
Journal:  Curr Protoc Cell Biol       Date:  2018-11-10

6.  Common structural traits for cystine knot domain of the TGFβ superfamily of proteins and three-fingered ectodomain of their cellular receptors.

Authors:  A Galat
Journal:  Cell Mol Life Sci       Date:  2011-03-03       Impact factor: 9.261

Review 7.  Molecular aspects of cyclophilins mediating therapeutic actions of their ligands.

Authors:  Andrzej Galat; Jacqueline Bua
Journal:  Cell Mol Life Sci       Date:  2010-07-04       Impact factor: 9.261

Review 8.  Conformational Dynamics in FKBP Domains: Relevance to Molecular Signaling and Drug Design.

Authors:  David M LeMaster; Griselda Hernandez
Journal:  Curr Mol Pharmacol       Date:  2015       Impact factor: 3.339

Review 9.  Functional diversity and pharmacological profiles of the FKBPs and their complexes with small natural ligands.

Authors:  Andrzej Galat
Journal:  Cell Mol Life Sci       Date:  2012-12-08       Impact factor: 9.261

10.  Statistical allosteric coupling to the active site indole ring flip equilibria in the FK506-binding domain.

Authors:  Janet S Anderson; Sourajit M Mustafi; Griselda Hernández; David M LeMaster
Journal:  Biophys Chem       Date:  2014-06-24       Impact factor: 2.352

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