Literature DB >> 18411057

XtalView, protein structure solution and protein graphics, a short history.

Duncan E McRee1, Mark Israel.   

Abstract

From a user's point-of-view we are in the Golden Age of protein crystallographic software. In the past few decades, solving protein structures has gone from a task requiring man-months of effort to a process requiring minutes on an ordinary laptop with no human intervention required. The birth of XtalView coincided with the mainstream use of synchrotron radiation, seleno-Met phasing and it continues to be used in this age of robotic crystallization, Fed-Ex data collection and fully automated structure solution "pipelines". This article is a retrospective history of protein crystallographic computing and a discussion of the current state of the art.

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Year:  2008        PMID: 18411057     DOI: 10.1016/j.jsb.2008.02.004

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  6 in total

1.  Bacterial chemoreceptor arrays are hexagonally packed trimers of receptor dimers networked by rings of kinase and coupling proteins.

Authors:  Ariane Briegel; Xiaoxiao Li; Alexandrine M Bilwes; Kelly T Hughes; Grant J Jensen; Brian R Crane
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

2.  Structure of the Toxoplasma gondii ROP18 kinase domain reveals a second ligand binding pocket required for acute virulence.

Authors:  Daniel Lim; Daniel A Gold; Lindsay Julien; Emily E Rosowski; Wendy Niedelman; Michael B Yaffe; Jeroen P J Saeij
Journal:  J Biol Chem       Date:  2013-10-15       Impact factor: 5.157

3.  Crystal structure of a glucose/H+ symporter and its mechanism of action.

Authors:  Cristina V Iancu; Jamillah Zamoon; Sang Bum Woo; Alexander Aleshin; Jun-yong Choe
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-14       Impact factor: 11.205

4.  Crystal structure of calcium dodecin (Rv0379), from Mycobacterium tuberculosis with a unique calcium-binding site.

Authors:  Arulandu Arockiasamy; Anup Aggarwal; Christos G Savva; Andreas Holzenburg; James C Sacchettini
Journal:  Protein Sci       Date:  2011-03-30       Impact factor: 6.725

5.  Fragment-based screen against HIV protease.

Authors:  Alexander L Perryman; Qing Zhang; Holly H Soutter; Robin Rosenfeld; Duncan E McRee; Arthur J Olson; John E Elder; C David Stout
Journal:  Chem Biol Drug Des       Date:  2010-01-19       Impact factor: 2.817

6.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
  6 in total

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