Literature DB >> 18395014

Quadruplex DNA crystal structures and drug design.

Stephen Neidle1, Gary N Parkinson.   

Abstract

Crystallographic studies of G-quadruplex nucleic acids have resulted in a small group of structures to date. Their morphological and detailed conformational features are described here, emphasizing the stability of the G-tetrad core and the flexibility of loops, especially upon ligand binding. Implications for drug design are discussed, in the context of the druggability of both telomeric and non-telomeric quadruplex DNAs.

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Year:  2008        PMID: 18395014     DOI: 10.1016/j.biochi.2008.03.003

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  38 in total

1.  Heterocyclic dications as a new class of telomeric G-quadruplex targeting agents.

Authors:  Rupesh Nanjunda; Caterina Musetti; Arvind Kumar; Mohamed A Ismail; Abdelbasset A Farahat; Siming Wang; Claudia Sissi; Manlio Palumbo; David W Boykin; W David Wilson
Journal:  Curr Pharm Des       Date:  2012       Impact factor: 3.116

2.  G-quadruplexes significantly stimulate Pif1 helicase-catalyzed duplex DNA unwinding.

Authors:  Xiao-Lei Duan; Na-Nv Liu; Yan-Tao Yang; Hai-Hong Li; Ming Li; Shuo-Xing Dou; Xu-Guang Xi
Journal:  J Biol Chem       Date:  2015-01-27       Impact factor: 5.157

Review 3.  [Application of atomic force microscopy-based single molecule force spectroscopy in G-quadruplex studies].

Authors:  Wenjing Liu; Tong Sun; Ping Zhang; Lin Li; Junhong Lv; Bin Li
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2018-08-30

4.  2-aminopurine as a probe for quadruplex loop structures.

Authors:  Robert D Gray; Luigi Petraccone; Robert Buscaglia; Jonathan B Chaires
Journal:  Methods Mol Biol       Date:  2010

5.  Single molecule force spectroscopy on G-quadruplex DNA.

Authors:  Susanna Lynch; Heather Baker; Sarah G Byker; Dejian Zhou; Kumar Sinniah
Journal:  Chemistry       Date:  2009-08-17       Impact factor: 5.236

6.  Synthesis of Macrocyclic Hexaoxazole (6OTD) Dimers, Containing Guanidine and Amine Functionalized Side Chains, and an Evaluation of Their Telomeric G4 Stabilizing Properties.

Authors:  Keisuke Iida; Masayuki Tera; Takatsugu Hirokawa; Kazuo Shin-Ya; Kazuo Nagasawa
Journal:  J Nucleic Acids       Date:  2010-05-24

Review 7.  Applications of isothermal titration calorimetry in biophysical studies of G-quadruplexes.

Authors:  Bruno Pagano; Carlo Andrea Mattia; Concetta Giancola
Journal:  Int J Mol Sci       Date:  2009-07-02       Impact factor: 6.208

8.  Genome-wide colonization of gene regulatory elements by G4 DNA motifs.

Authors:  Zhuo Du; Yiqiang Zhao; Ning Li
Journal:  Nucleic Acids Res       Date:  2009-09-16       Impact factor: 16.971

9.  Stability of intramolecular quadruplexes: sequence effects in the central loop.

Authors:  Aurore Guédin; Patrizia Alberti; Jean-Louis Mergny
Journal:  Nucleic Acids Res       Date:  2009-07-06       Impact factor: 16.971

10.  Molecular models for intrastrand DNA G-quadruplexes.

Authors:  Federico Fogolari; Haritha Haridas; Alessandra Corazza; Paolo Viglino; Davide Corà; Michele Caselle; Gennaro Esposito; Luigi E Xodo
Journal:  BMC Struct Biol       Date:  2009-10-07
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