Literature DB >> 18391407

A mixture of fortunes: the curious determination of the structure of Escherichia coli BL21 Gab protein.

Bernhard Lohkamp1, Doreen Dobritzsch.   

Abstract

In protein crystallography, monodisperse protein samples of high purity are usually required in order to obtain diffraction-quality crystals. Here, crystals were reproducibly grown from a protein sample before its homogeneity had been determined. The sample was obtained after the first attempt to purify a recombinant target protein from an Escherichia coli cell lysate. Subsequent analysis revealed that it was a mixture of about 50 different proteins with no predominant species. Diffraction data were collected to 2.1 A and the space group was identified as I422. A molecular-replacement search with models of the expected target did not give a solution, which suggested that a contaminating E. coli protein had been crystallized. A PDB search revealed 256 structures determined in space group I422, of which 14 are E. coli proteins and two have unit-cell parameters similar to those observed. Molecular replacement with these structures showed a clear solution for one of them, the Gab protein. The structure is presented and compared with the deposited structure, from which it shows small but significant differences. The refined model contains bicine and sulfate as bound ligands, which provide insights into possible substrate-binding sites.

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Year:  2008        PMID: 18391407     DOI: 10.1107/S0907444908001091

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  10 in total

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Journal:  Protein Sci       Date:  2016-01-26       Impact factor: 6.725

Review 2.  Glutarate L-2-hydroxylase (CsiD/GlaH) is an archetype Fe(II)/2-oxoglutarate-dependent dioxygenase.

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3.  Identification, structure determination and analysis of Mycobacterium smegmatis acyl-carrier protein synthase (AcpS) crystallized serendipitously.

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4.  There is a baby in the bath water: AcrB contamination is a major problem in membrane-protein crystallization.

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Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-09-30

5.  Triosephosphate isomerase is a common crystallization contaminant of soluble His-tagged proteins produced in Escherichia coli.

Authors:  Guennadi Kozlov; Roohi Vinaik; Kalle Gehring
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7.  Stubborn contaminants: influence of detergents on the purity of the multidrug ABC transporter BmrA.

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9.  Widespread bacterial lysine degradation proceeding via glutarate and L-2-hydroxyglutarate.

Authors:  Sebastian Knorr; Malte Sinn; Dmitry Galetskiy; Rhys M Williams; Changhao Wang; Nicolai Müller; Olga Mayans; David Schleheck; Jörg S Hartig
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10.  A critical examination of the recently reported crystal structures of the human SMN protein.

Authors:  Manfred S Weiss; Kay Diederichs; Randy J Read; Santosh Panjikar; Gregory D Van Duyne; A Gregory Matera; Utz Fischer; Clemens Grimm
Journal:  Hum Mol Genet       Date:  2016-08-29       Impact factor: 6.150

  10 in total

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