Literature DB >> 18386011

From single cells to tissue architecture-a bottom-up approach to modelling the spatio-temporal organisation of complex multi-cellular systems.

J Galle1, M Hoffmann, G Aust.   

Abstract

Collective phenomena in multi-cellular assemblies can be approached on different levels of complexity. Here, we discuss a number of mathematical models which consider the dynamics of each individual cell, so-called agent-based or individual-based models (IBMs). As a special feature, these models allow to account for intracellular decision processes which are triggered by biomechanical cell-cell or cell-matrix interactions. We discuss their impact on the growth and homeostasis of multi-cellular systems as simulated by lattice-free models. Our results demonstrate that cell polarisation subsequent to cell-cell contact formation can be a source of stability in epithelial monolayers. Stroma contact-dependent regulation of tumour cell proliferation and migration is shown to result in invasion dynamics in accordance with the migrating cancer stem cell hypothesis. However, we demonstrate that different regulation mechanisms can equally well comply with present experimental results. Thus, we suggest a panel of experimental studies for the in-depth validation of the model assumptions.

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Mesh:

Year:  2008        PMID: 18386011     DOI: 10.1007/s00285-008-0172-4

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  78 in total

1.  Tissue stem cells: definition, plasticity, heterogeneity, self-organization and models--a conceptual approach.

Authors:  Markus Loeffler; Ingo Roeder
Journal:  Cells Tissues Organs       Date:  2002       Impact factor: 2.481

Review 2.  Stem cell plasticity: an overview.

Authors:  Peter J Quesenberry; Mehrdad Abedi; Jason Aliotta; Gerald Colvin; Delia Demers; Mark Dooner; Deborah Greer; Hannah Hebert; M K Menon; Jeffrey Pimentel; Diane Paggioli
Journal:  Blood Cells Mol Dis       Date:  2004 Jan-Feb       Impact factor: 3.039

3.  Mathematical modelling of the loss of tissue compression responsiveness and its role in solid tumour development.

Authors:  M A J Chaplain; L Graziano; L Preziosi
Journal:  Math Med Biol       Date:  2006-04-28       Impact factor: 1.854

4.  A cell-based model exhibiting branching and anastomosis during tumor-induced angiogenesis.

Authors:  Amy L Bauer; Trachette L Jackson; Yi Jiang
Journal:  Biophys J       Date:  2007-02-02       Impact factor: 4.033

Review 5.  Opinion: migrating cancer stem cells - an integrated concept of malignant tumour progression.

Authors:  Thomas Brabletz; Andreas Jung; Simone Spaderna; Falk Hlubek; Thomas Kirchner
Journal:  Nat Rev Cancer       Date:  2005-09       Impact factor: 60.716

6.  A single-cell-based model of tumor growth in vitro: monolayers and spheroids.

Authors:  Dirk Drasdo; Stefan Höhme
Journal:  Phys Biol       Date:  2005-07-12       Impact factor: 2.583

7.  Individual-based modelling of biofilms.

Authors:  J U Kreft; C Picioreanu; J W Wimpenny; M C van Loosdrecht
Journal:  Microbiology       Date:  2001-11       Impact factor: 2.777

8.  Differing modes of tumour cell invasion have distinct requirements for Rho/ROCK signalling and extracellular proteolysis.

Authors:  Erik Sahai; Christopher J Marshall
Journal:  Nat Cell Biol       Date:  2003-08       Impact factor: 28.824

9.  Focal adhesion kinase suppresses Rho activity to promote focal adhesion turnover.

Authors:  X D Ren; W B Kiosses; D J Sieg; C A Otey; D D Schlaepfer; M A Schwartz
Journal:  J Cell Sci       Date:  2000-10       Impact factor: 5.285

10.  The origin of phenotypic heterogeneity in a clonal cell population in vitro.

Authors:  Daniel Stockholm; Rachid Benchaouir; Julien Picot; Philippe Rameau; Thi My Anh Neildez; Gabriel Landini; Corinne Laplace-Builhé; Andras Paldi
Journal:  PLoS One       Date:  2007-04-25       Impact factor: 3.240

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  29 in total

Review 1.  A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development.

Authors:  Giovanni De Matteis; Alex Graudenzi; Marco Antoniotti
Journal:  J Math Biol       Date:  2012-05-08       Impact factor: 2.259

Review 2.  At the biological modeling and simulation frontier.

Authors:  C Anthony Hunt; Glen E P Ropella; Tai Ning Lam; Jonathan Tang; Sean H J Kim; Jesse A Engelberg; Shahab Sheikh-Bahaei
Journal:  Pharm Res       Date:  2009-09-09       Impact factor: 4.200

3.  Nitric oxide, oxygen, and superoxide formation and consumption in macrophages and colonic epithelial cells.

Authors:  Melanie P Chin; David B Schauer; William M Deen
Journal:  Chem Res Toxicol       Date:  2010-04-19       Impact factor: 3.739

Review 4.  Systems biology beyond networks: generating order from disorder through self-organization.

Authors:  K Saetzler; C Sonnenschein; A M Soto
Journal:  Semin Cancer Biol       Date:  2011-05-06       Impact factor: 15.707

5.  Influence of individual cell motility on the 2D front roughness dynamics of tumour cell colonies.

Authors:  N E Muzzio; M A Pasquale; P H González; A J Arvia
Journal:  J Biol Phys       Date:  2014-06-04       Impact factor: 1.365

6.  The effects of cell compressibility, motility and contact inhibition on the growth of tumor cell clusters using the Cellular Potts Model.

Authors:  Jonathan F Li; John Lowengrub
Journal:  J Theor Biol       Date:  2013-11-06       Impact factor: 2.691

7.  Tumor morphological evolution: directed migration and gain and loss of the self-metastatic phenotype.

Authors:  Heiko Enderling; Lynn Hlatky; Philip Hahnfeldt
Journal:  Biol Direct       Date:  2010-04-20       Impact factor: 4.540

8.  Mathematical Oncology: How Are the Mathematical and Physical Sciences Contributing to the War on Breast Cancer?

Authors:  Arnaud H Chauviere; Haralampos Hatzikirou; John S Lowengrub; Hermann B Frieboes; Alastair M Thompson; Vittorio Cristini
Journal:  Curr Breast Cancer Rep       Date:  2010-07-22

9.  A computational approach to understand in vitro alveolar morphogenesis.

Authors:  Sean H J Kim; Wei Yu; Keith Mostov; Michael A Matthay; C Anthony Hunt
Journal:  PLoS One       Date:  2009-03-13       Impact factor: 3.240

10.  Migration rules: tumours are conglomerates of self-metastases.

Authors:  H Enderling; L Hlatky; P Hahnfeldt
Journal:  Br J Cancer       Date:  2009-05-19       Impact factor: 7.640

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