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Literature DB >> 18376389

Whole genome-amplified DNA: insights and imputation.

Yik Y Teo, Michael Inouye, Kerrin S Small, Andrew E Fry, Simon C Potter, Sarah J Dunstan, Mark Seielstad, Inês Barroso, Nicholas J Wareham, Kirk A Rockett, Dominic P Kwiatkowski, Panos Deloukas.

Abstract

Entities: Chemical

Mesh：

Substances：
DNA

Year: 2008 PMID： 18376389 PMCID： PMC2683750 DOI： 10.1038/nmeth0408-279

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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5 in total

1. Comprehensive human genome amplification using multiple displacement amplification.

Authors: Frank B Dean; Seiyu Hosono; Linhua Fang; Xiaohong Wu; A Fawad Faruqi; Patricia Bray-Ward; Zhenyu Sun; Qiuling Zong; Yuefen Du; Jing Du; Mark Driscoll; Wanmin Song; Stephen F Kingsmore; Michael Egholm; Roger S Lasken
Journal: Proc Natl Acad Sci U S A Date: 2002-04-16 Impact factor: 11.205

2. Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH.

Authors: José M Lage; John H Leamon; Tanja Pejovic; Stefan Hamann; Michelle Lacey; Deborah Dillon; Richard Segraves; Bettina Vossbrinck; Antonio González; Daniel Pinkel; Donna G Albertson; Jose Costa; Paul M Lizardi
Journal: Genome Res Date: 2003-02 Impact factor: 9.043

3. Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification.

Authors: J Guillermo Paez; Ming Lin; Rameen Beroukhim; Jeffrey C Lee; Xiaojun Zhao; Daniel J Richter; Stacey Gabriel; Paula Herman; Hidefumi Sasaki; David Altshuler; Cheng Li; Matthew Meyerson; William R Sellers
Journal: Nucleic Acids Res Date: 2004-05-18 Impact factor: 16.971

4. A new multipoint method for genome-wide association studies by imputation of genotypes.

Authors: Jonathan Marchini; Bryan Howie; Simon Myers; Gil McVean; Peter Donnelly
Journal: Nat Genet Date: 2007-06-17 Impact factor: 38.330

5. A genotype calling algorithm for the Illumina BeadArray platform.

Authors: Yik Y Teo; Michael Inouye; Kerrin S Small; Rhian Gwilliam; Panagiotis Deloukas; Dominic P Kwiatkowski; Taane G Clark
Journal: Bioinformatics Date: 2007-09-10 Impact factor: 6.937

5 in total

6 in total

1. Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation.

Authors: Mark D Robinson; Clare Stirzaker; Aaron L Statham; Marcel W Coolen; Jenny Z Song; Shalima S Nair; Dario Strbenac; Terence P Speed; Susan J Clark
Journal: Genome Res Date: 2010-11-02 Impact factor: 9.043

Whole genome-amplified DNA: insights and imputation.

1. Comprehensive human genome amplification using multiple displacement amplification.

2. Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH.

3. Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification.

4. A new multipoint method for genome-wide association studies by imputation of genotypes.

5. A genotype calling algorithm for the Illumina BeadArray platform.

1. Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation.

2. A procedure for highly specific, sensitive, and unbiased whole-genome amplification.

3. High fidelity of whole-genome amplified DNA on high-density single nucleotide polymorphism arrays.

4. Host genetic and epigenetic factors in toxoplasmosis.

5. Evaluation of genome coverage and fidelity of multiple displacement amplification from single cells by SNP array.

6. A global network for investigating the genomic epidemiology of malaria.