Literature DB >> 18372286

Proteomics in Caenorhabditis elegans.

Anjon Audhya1, Arshad Desai.   

Abstract

Proteomic approaches are increasingly being used to complement genetic and RNA interference-based studies of gene function in Caenorhabditis elegans. Several strategies to isolate protein complexes from whole worms and individual differentiated cell types have been described. In vivo labelling methods have also been developed to quantitatively assess proteome-wide changes depending on genetic composition or developmental stage. Here, we review proteomic approaches that are becoming part of the essential toolbox for studies of gene function in C. elegans and highlight specific examples where their application has led to important new insights.

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Year:  2008        PMID: 18372286     DOI: 10.1093/bfgp/eln014

Source DB:  PubMed          Journal:  Brief Funct Genomic Proteomic        ISSN: 1473-9550


  7 in total

1.  Affinity purification of protein complexes in C. elegans.

Authors:  Esther Zanin; Julien Dumont; Reto Gassmann; Iain Cheeseman; Paul Maddox; Shirin Bahmanyar; Ana Carvalho; Sherry Niessen; John R Yates; Karen Oegema; Arshad Desai
Journal:  Methods Cell Biol       Date:  2011       Impact factor: 1.441

2.  Isolation of serpin-interacting proteins in C. elegans using protein affinity purification.

Authors:  Mark T Miedel; Xuemei Zeng; Nathan A Yates; Gary A Silverman; Cliff J Luke
Journal:  Methods       Date:  2014-05-02       Impact factor: 3.608

Review 3.  Worming our way in and out of the Caenorhabditis elegans germline and developing embryo.

Authors:  Michael Hanna; Lei Wang; Anjon Audhya
Journal:  Traffic       Date:  2013-02-06       Impact factor: 6.215

4.  A proteomic view of Caenorhabditis elegans caused by short-term hypoxic stress.

Authors:  Hualing Li; Changhong Ren; Jinping Shi; Xingyi Hang; Feilong Zhang; Yan Gao; Yonghong Wu; Langlai Xu; Changsheng Chen; Chenggang Zhang
Journal:  Proteome Sci       Date:  2010-09-21       Impact factor: 2.480

5.  SnAvi--a new tandem tag for high-affinity protein-complex purification.

Authors:  Ursula Schäffer; Andreas Schlosser; Kristian M Müller; Angelika Schäfer; Nenad Katava; Ralf Baumeister; Ekkehard Schulze
Journal:  Nucleic Acids Res       Date:  2010-01-04       Impact factor: 16.971

6.  A simplified, robust, and streamlined procedure for the production of C. elegans transgenes via recombineering.

Authors:  Yue Zhang; Lindsey Nash; Alfred L Fisher
Journal:  BMC Dev Biol       Date:  2008-12-30       Impact factor: 1.978

7.  Micro-proteomics with iterative data analysis: Proteome analysis in C. elegans at the single worm level.

Authors:  Dalila Bensaddek; Vikram Narayan; Armel Nicolas; Alejandro Brenes Murillo; Anton Gartner; Cynthia J Kenyon; Angus I Lamond
Journal:  Proteomics       Date:  2016-01-07       Impact factor: 3.984

  7 in total

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