Literature DB >> 18371447

MicroRNA regulation of cell lineages in mouse and human embryonic stem cells.

Kathryn N Ivey1, Alecia Muth, Joshua Arnold, Frank W King, Ru-Fang Yeh, Jason E Fish, Edward C Hsiao, Robert J Schwartz, Bruce R Conklin, Harold S Bernstein, Deepak Srivastava.   

Abstract

Cell fate decisions of pluripotent embryonic stem (ES) cells are dictated by activation and repression of lineage-specific genes. Numerous signaling and transcriptional networks progressively narrow and specify the potential of ES cells. Whether specific microRNAs help refine and limit gene expression and, thereby, could be used to manipulate ES cell differentiation has largely been unexplored. Here, we show that two serum response factor (SRF)-dependent muscle-specific microRNAs, miR-1 and miR-133, promote mesoderm formation from ES cells but have opposing functions during further differentiation into cardiac muscle progenitors. Furthermore, miR-1 and miR-133 were potent repressors of nonmuscle gene expression and cell fate during mouse and human ES cell differentiation. miR-1's effects were in part mediated by translational repression of the Notch ligand Delta-like 1 (Dll-1). Our findings indicate that muscle-specific miRNAs reinforce the silencing of nonmuscle genes during cell lineage commitment and suggest that miRNAs may have general utility in regulating cell-fate decisions from pluripotent ES cells.

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Year:  2008        PMID: 18371447      PMCID: PMC2293325          DOI: 10.1016/j.stem.2008.01.016

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  36 in total

1.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

Review 2.  Lineage choice and differentiation in mouse embryos and embryonic stem cells.

Authors:  David A F Loebel; Catherine M Watson; R Andrea De Young; Patrick P L Tam
Journal:  Dev Biol       Date:  2003-12-01       Impact factor: 3.582

3.  Embryonic stem cell-specific MicroRNAs.

Authors:  Hristo B Houbaviy; Michael F Murray; Phillip A Sharp
Journal:  Dev Cell       Date:  2003-08       Impact factor: 12.270

Review 4.  MicroRNAs: small RNAs with a big role in gene regulation.

Authors:  Lin He; Gregory J Hannon
Journal:  Nat Rev Genet       Date:  2004-07       Impact factor: 53.242

5.  Preprocessing of oligonucleotide array data.

Authors:  Zhijin Wu; Rafael A Irizarry
Journal:  Nat Biotechnol       Date:  2004-06       Impact factor: 54.908

Review 6.  The functions of animal microRNAs.

Authors:  Victor Ambros
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

7.  Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing.

Authors:  Chryssa Kanellopoulou; Stefan A Muljo; Andrew L Kung; Shridar Ganesan; Ronny Drapkin; Thomas Jenuwein; David M Livingston; Klaus Rajewsky
Journal:  Genes Dev       Date:  2005-02-15       Impact factor: 11.361

8.  The combinatorial activities of Nkx2.5 and dHAND are essential for cardiac ventricle formation.

Authors:  H Yamagishi; C Yamagishi; O Nakagawa; R P Harvey; E N Olson; D Srivastava
Journal:  Dev Biol       Date:  2001-11-15       Impact factor: 3.582

9.  A twist code determines the onset of osteoblast differentiation.

Authors:  Peter Bialek; Britt Kern; Xiangli Yang; Marijke Schrock; Drazen Sosic; Nancy Hong; Hua Wu; Kai Yu; David M Ornitz; Eric N Olson; Monica J Justice; Gerard Karsenty
Journal:  Dev Cell       Date:  2004-03       Impact factor: 12.270

10.  Nodal inhibits differentiation of human embryonic stem cells along the neuroectodermal default pathway.

Authors:  Ludovic Vallier; Daniel Reynolds; Roger A Pedersen
Journal:  Dev Biol       Date:  2004-11-15       Impact factor: 3.582

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  250 in total

1.  myc maintains embryonic stem cell pluripotency and self-renewal.

Authors:  Natalia V Varlakhanova; Rebecca F Cotterman; Wilhelmine N deVries; Judy Morgan; Leah Rae Donahue; Stephen Murray; Barbara B Knowles; Paul S Knoepfler
Journal:  Differentiation       Date:  2010-05-27       Impact factor: 3.880

2.  MicroRNA dysregulation following spinal cord contusion: implications for neural plasticity and repair.

Authors:  E R Strickland; M A Hook; S Balaraman; J R Huie; J W Grau; R C Miranda
Journal:  Neuroscience       Date:  2011-04-07       Impact factor: 3.590

3.  ER71 directs mesodermal fate decisions during embryogenesis.

Authors:  Tara L Rasmussen; Junghun Kweon; Mackenzie A Diekmann; Fikru Belema-Bedada; Qingfeng Song; Kathy Bowlin; Xiaozhong Shi; Anwarul Ferdous; Tongbin Li; Michael Kyba; Joseph M Metzger; Naoko Koyano-Nakagawa; Daniel J Garry
Journal:  Development       Date:  2011-11       Impact factor: 6.868

4.  Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation.

Authors:  Nathan Salomonis; Christopher R Schlieve; Laura Pereira; Christine Wahlquist; Alexandre Colas; Alexander C Zambon; Karen Vranizan; Matthew J Spindler; Alexander R Pico; Melissa S Cline; Tyson A Clark; Alan Williams; John E Blume; Eva Samal; Mark Mercola; Bradley J Merrill; Bruce R Conklin
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-24       Impact factor: 11.205

5.  The magic and mystery of miR-21.

Authors:  Edward E Morrisey
Journal:  J Clin Invest       Date:  2010-10-18       Impact factor: 14.808

Review 6.  Lineage determinants in early endocrine development.

Authors:  Sebastian Rieck; Eric D Bankaitis; Christopher V E Wright
Journal:  Semin Cell Dev Biol       Date:  2012-06-21       Impact factor: 7.727

Review 7.  microRNAs in cardiovascular development.

Authors:  Jinghai Chen; Da-Zhi Wang
Journal:  J Mol Cell Cardiol       Date:  2012-01-24       Impact factor: 5.000

Review 8.  MiR-34 and MiR-200: Regulator of Cell Fate Plasticity and Neural Development.

Authors:  Abhishek Jauhari; Sanjay Yadav
Journal:  Neuromolecular Med       Date:  2019-04-08       Impact factor: 3.843

9.  Targeting miRNA for Therapy of Juvenile and Adult Diabetic Cardiomyopathy.

Authors:  Shyam Sundar Nandi; Paras Kumar Mishra
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

10.  Tissue-specific miRNA Expression Profiling in Mouse Heart Sections Using In Situ Hybridization.

Authors:  Fani Memi; Daniela Tirziu; Irinna Papangeli
Journal:  J Vis Exp       Date:  2018-09-15       Impact factor: 1.355

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