Literature DB >> 18370410

The role of serine 167 in human indoleamine 2,3-dioxygenase: a comparison with tryptophan 2,3-dioxygenase.

Nishma Chauhan1, Jaswir Basran, Igor Efimov, Dimitri A Svistunenko, Harriet E Seward, Peter C E Moody, Emma Lloyd Raven.   

Abstract

The initial step in the l-kynurenine pathway is oxidation of l-tryptophan to N-formylkynurenine and is catalyzed by one of two heme enzymes, tryptophan 2,3-dioxygenase (TDO) or indoleamine 2,3-dioxygenase (IDO). Here, we address the role of the conserved active site Ser167 residue in human IDO (S167A and S167H variants), which is replaced with a histidine in other mammalian and bacterial TDO enzymes. Our kinetic and spectroscopic data for S167A indicate that this residue is not essential for O 2 or substrate binding, and we propose that hydrogen bond stabilization of the catalytic ferrous-oxy complex involves active site water molecules in IDO. The data for S167H show that the ferrous-oxy complex is dramatically destabilized in this variant, which is similar to the behavior observed in human TDO [Basran et al. (2008) Biochemistry 47, 4752-4760], and that this destabilization essentially destroys catalytic activity. New kinetic data for the wild-type enzyme also identify the ternary [enzyme-O 2-substrate] complex. The data reveal significant differences between the IDO and TDO enzymes, and the implications of these results are discussed in terms of our current understanding of IDO and TDO catalysis.

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Year:  2008        PMID: 18370410     DOI: 10.1021/bi702405a

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  27 in total

1.  Spectroscopic studies of ligand and substrate binding to human indoleamine 2,3-dioxygenase.

Authors:  Changyuan Lu; Yu Lin; Syun-Ru Yeh
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

2.  NADH oxidase activity of indoleamine 2,3-dioxygenase.

Authors:  Federico I Rosell; Hsin H Kuo; A Grant Mauk
Journal:  J Biol Chem       Date:  2011-06-20       Impact factor: 5.157

3.  Conformational Plasticity in Human Heme-Based Dioxygenases.

Authors:  Khoa N Pham; Ariel Lewis-Ballester; Syun-Ru Yeh
Journal:  J Am Chem Soc       Date:  2020-12-29       Impact factor: 15.419

4.  The first step of the dioxygenation reaction carried out by tryptophan dioxygenase and indoleamine 2,3-dioxygenase as revealed by quantum mechanical/molecular mechanical studies.

Authors:  Luciana Capece; Ariel Lewis-Ballester; Dipanwita Batabyal; Natali Di Russo; Syun-Ru Yeh; Dario A Estrin; Marcelo A Marti
Journal:  J Biol Inorg Chem       Date:  2010-04-02       Impact factor: 3.358

5.  Ligand migration in human indoleamine-2,3 dioxygenase.

Authors:  Karin Nienhaus; Elena Nickel; Changyuan Lu; Syun-Ru Yeh; G Ulrich Nienhaus
Journal:  IUBMB Life       Date:  2011-03       Impact factor: 3.885

6.  Complete reaction mechanism of indoleamine 2,3-dioxygenase as revealed by QM/MM simulations.

Authors:  Luciana Capece; Ariel Lewis-Ballester; Syun-Ru Yeh; Dario A Estrin; Marcelo A Marti
Journal:  J Phys Chem B       Date:  2012-01-23       Impact factor: 2.991

7.  Probing the ternary complexes of indoleamine and tryptophan 2,3-dioxygenases by cryoreduction EPR and ENDOR spectroscopy.

Authors:  Roman M Davydov; Nishma Chauhan; Sarah J Thackray; J L Ross Anderson; Nektaria D Papadopoulou; Christopher G Mowat; Stephen K Chapman; Emma L Raven; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2010-04-21       Impact factor: 15.419

8.  Human indoleamine 2,3-dioxygenase is a catalyst of physiological heme peroxidase reactions: implications for the inhibition of dioxygenase activity by hydrogen peroxide.

Authors:  Mohammed Freewan; Martin D Rees; Tito S Sempértegui Plaza; Elias Glaros; Yean J Lim; Xiao Suo Wang; Amanda W S Yeung; Paul K Witting; Andrew C Terentis; Shane R Thomas
Journal:  J Biol Chem       Date:  2012-12-03       Impact factor: 5.157

9.  EPR and Mössbauer spectroscopy show inequivalent hemes in tryptophan dioxygenase.

Authors:  Rupal Gupta; Rong Fu; Aimin Liu; Michael P Hendrich
Journal:  J Am Chem Soc       Date:  2010-01-27       Impact factor: 15.419

10.  Structural Study of a Flexible Active Site Loop in Human Indoleamine 2,3-Dioxygenase and Its Functional Implications.

Authors:  Lucía Álvarez; Ariel Lewis-Ballester; Adrián Roitberg; Darío A Estrin; Syun-Ru Yeh; Marcelo A Marti; Luciana Capece
Journal:  Biochemistry       Date:  2016-05-06       Impact factor: 3.162

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