Literature DB >> 18355443

Aromatic-aromatic interactions in the formation of the MDM2-p53 complex.

L Michel Espinoza-Fonseca1, Jazmín García-Machorro.   

Abstract

Although the molecular interaction of MDM2 with the transactivation domain of p53 has been thoroughly studied, there is very limited information regarding the steps involved in the recognition mechanism between these proteins. On this basis, we performed four high-temperature molecular dynamics simulations in explicit solvent to gain insight into the interactions involved in the fist contact toward the formation of the complex. We found that the presence of specific intermolecular aromatic pairs at the interface of the complex, around the native-like state of MDM2, is consistent among independent molecular dynamics runs. This observation suggests that aromatic-aromatic interactions are closely related to the first contact between MDM2 and p53. Thus, we propose that aromatic-aromatic interactions are an important, and probably essential, requirement for the formation and stabilization of the MDM2-p53 complex.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18355443     DOI: 10.1016/j.bbrc.2008.03.053

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  5 in total

1.  A function for the RING finger domain in the allosteric control of MDM2 conformation and activity.

Authors:  Bartosz Wawrzynow; Susanne Pettersson; Alicja Zylicz; Janice Bramham; Erin Worrall; Ted R Hupp; Kathryn L Ball
Journal:  J Biol Chem       Date:  2009-02-02       Impact factor: 5.157

2.  Transient protein states in designing inhibitors of the MDM2-p53 interaction.

Authors:  Michal Bista; Siglinde Wolf; Kareem Khoury; Kaja Kowalska; Yijun Huang; Ewa Wrona; Marcelino Arciniega; Grzegorz M Popowicz; Tad A Holak; Alexander Dömling
Journal:  Structure       Date:  2013-10-24       Impact factor: 5.006

3.  Combining molecular docking and molecular dynamics to predict the binding modes of flavonoid derivatives with the neuraminidase of the 2009 H1N1 influenza A virus.

Authors:  Shih-Jen Lu; Fok-Ching Chong
Journal:  Int J Mol Sci       Date:  2012-04-10       Impact factor: 6.208

4.  Probing the role of aromatic residues in the self-assembly of Aβ(16-22) in fluorinated alcohols and their aqueous mixtures.

Authors:  Sanjai Kumar Pachahara; Ramakrishnan Nagaraj
Journal:  Biochem Biophys Rep       Date:  2015-04-25

5.  Computational screening of known broad-spectrum antiviral small organic molecules for potential influenza HA stem inhibitors.

Authors:  Shilu Mathew; Asmaa A Al Thani; Hadi M Yassine
Journal:  PLoS One       Date:  2018-09-04       Impact factor: 3.240

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.