Literature DB >> 18355061

Experimental and theoretical studies of sodium cation interactions with the acidic amino acids and their amide derivatives.

A L Heaton1, R M Moision, P B Armentrout.   

Abstract

The binding of Na+ to aspartic acid (Asp), glutamic acid (Glu), asparagine (Asn), and glutamine (Gln) is examined in detail by studying the collision-induced dissociation (CID) of the four sodiated amino acid complexes with Xe using a guided ion beam tandem mass spectrometer (GIBMS). Analysis of the energy-dependent CID cross sections provides 0 K sodium cation affinities for the complexes after accounting for unimolecular decay rates, internal energy of the reactant ions, and multiple ion-molecule collisions. Quantum chemical calculations for a number of geometric conformations of each Na+(L) complex are determined at the B3LYP/6-311+G(d,p) level with single-point energies calculated at MP2(full), B3LYP, and B3P86 levels using a 6-311+G(2d,2p) basis set. This coordinated examination of both experimental work and quantum chemical calculations allows the energetic contributions of individual functionalities as well as steric influences of relative chain lengths to be thoroughly explored. Na+ binding affinities for the amide complexes are systematically stronger than those for the acid complexes by 14 +/- 1 kJ/mol, which is attributed to an inductive effect of the OH group in the carboxylic acid side chain. Additionally, the Na+ binding affinity for the longer-chain amino acids (Glx) is enhanced by 4 +/- 1 kJ/mol compared to the shorter-chain Asx because steric effects are reduced.

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Year:  2008        PMID: 18355061     DOI: 10.1021/jp711649g

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  11 in total

1.  Thermodynamics and mechanisms of protonated diglycine decomposition: a guided ion beam study.

Authors:  P B Armentrout; Amy L Heaton
Journal:  J Am Soc Mass Spectrom       Date:  2011-08-17       Impact factor: 3.109

2.  An IMS-IMS threshold method for semi-quantitative determination of activation barriers: Interconversion of proline cis↔trans forms in triply protonated bradykinin.

Authors:  Nicholas A Pierson; David E Clemmer
Journal:  Int J Mass Spectrom       Date:  2015-02-01       Impact factor: 1.986

3.  Thermochemistry of non-covalent ion-molecule interactions.

Authors:  P B Armentrout; M T Rodgers
Journal:  Mass Spectrom (Tokyo)       Date:  2013-04-15

4.  Thermodynamics and Reaction Mechanisms of Decomposition of the Simplest Protonated Tripeptide, Triglycine: A Guided Ion Beam and Computational Study.

Authors:  Abhigya Mookherjee; Michael J Van Stipdonk; P B Armentrout
Journal:  J Am Soc Mass Spectrom       Date:  2017-02-14       Impact factor: 3.109

5.  Thermodynamics and mechanism of protonated cysteine decomposition: a guided ion beam and computational study.

Authors:  P B Armentrout; Elana M S Stennett
Journal:  J Am Soc Mass Spectrom       Date:  2014-02-05       Impact factor: 3.109

6.  Structural mass spectrometry: rapid methods for separation and analysis of peptide natural products.

Authors:  Cody R Goodwin; Larissa S Fenn; Dagmara K Derewacz; Brian O Bachmann; John A McLean
Journal:  J Nat Prod       Date:  2012-01-04       Impact factor: 4.050

7.  Thermodynamics and Reaction Mechanisms for Decomposition of a Simple Protonated Tripeptide, H+GAG: a Guided Ion Beam and Computational Study.

Authors:  A Mookherjee; P B Armentrout
Journal:  J Am Soc Mass Spectrom       Date:  2019-03-08       Impact factor: 3.109

8.  Substance P in the Gas Phase: Conformational Changes and Dissociations Induced by Collisional Activation in a Drift Tube.

Authors:  Christopher R Conant; Daniel R Fuller; Zhichao Zhang; Daniel W Woodall; David H Russell; David E Clemmer
Journal:  J Am Soc Mass Spectrom       Date:  2019-04-12       Impact factor: 3.109

9.  Thermodynamics and mechanism of protonated asparagine decomposition.

Authors:  Amy L Heaton; Peter B Armentrout
Journal:  J Am Soc Mass Spectrom       Date:  2009-01-09       Impact factor: 3.109

10.  First-principles data set of 45,892 isolated and cation-coordinated conformers of 20 proteinogenic amino acids.

Authors:  Matti Ropo; Markus Schneider; Carsten Baldauf; Volker Blum
Journal:  Sci Data       Date:  2016-02-16       Impact factor: 6.444

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