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Literature DB >> 18353980

Local knowledge helps determine protein structures.

Michael R Gryk¹, Jeffrey C Hoch.

Abstract

Mesh：

Substances：
Proteins

Year: 2008 PMID： 18353980 PMCID： PMC2290792 DOI： 10.1073/pnas.0801069105

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

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12 in total

1. Ab initio protein structure prediction of CASP III targets using ROSETTA.

Authors: K T Simons; R Bonneau; I Ruczinski; D Baker
Journal: Proteins Date: 1999

2. The Protein Data Bank.

Authors: H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

Review 3. Use of chemical shifts in macromolecular structure determination.

Authors: D S Wishart; D A Case
Journal: Methods Enzymol Date: 2001 Impact factor: 1.600

4. Protein structure determination from NMR chemical shifts.

Authors: Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal: Proc Natl Acad Sci U S A Date: 2007-05-29 Impact factor: 11.205

5. A comparison of quantum chemical models for calculating NMR shielding parameters in peptides: mixed basis set and ONIOM methods combined with a complete basis set extrapolation.

Authors: Seongho Moon; David A Case
Journal: J Comput Chem Date: 2006-05 Impact factor: 3.376

6. VMD: visual molecular dynamics.

Authors: W Humphrey; A Dalke; K Schulten
Journal: J Mol Graph Date: 1996-02

7. New methods of structure refinement for macromolecular structure determination by NMR.

Authors: G M Clore; A M Gronenborn
Journal: Proc Natl Acad Sci U S A Date: 1998-05-26 Impact factor: 11.205

8. Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors: G Cornilescu; F Delaglio; A Bax
Journal: J Biomol NMR Date: 1999-03 Impact factor: 2.835

9. Application of the random coil index to studying protein flexibility.

Authors: Mark V Berjanskii; David S Wishart
Journal: J Biomol NMR Date: 2007-11-06 Impact factor: 2.835

Authors: Eldon L Ulrich; Hideo Akutsu; Jurgen F Doreleijers; Yoko Harano; Yannis E Ioannidis; Jundong Lin; Miron Livny; Steve Mading; Dimitri Maziuk; Zachary Miller; Eiichi Nakatani; Christopher F Schulte; David E Tolmie; R Kent Wenger; Hongyang Yao; John L Markley
Journal: Nucleic Acids Res Date: 2007-11-04 Impact factor: 16.971

2 in total

1. De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds.

Authors: Yang Shen; Philip N Bryan; Yanan He; John Orban; David Baker; Ad Bax
Journal: Protein Sci Date: 2010-02 Impact factor: 6.725

2. De novo protein structure generation from incomplete chemical shift assignments.

Authors: Yang Shen; Robert Vernon; David Baker; Ad Bax
Journal: J Biomol NMR Date: 2008-11-26 Impact factor: 2.835

2 in total