Literature DB >> 18348249

Persea americana (avocado): bringing ancient flowers to fruit in the genomics era.

André S Chanderbali1, Victor A Albert, Vanessa E T M Ashworth, Michael T Clegg, Richard E Litz, Douglas E Soltis, Pamela S Soltis.   

Abstract

The avocado (Persea americana) is a major crop commodity worldwide. Moreover, avocado, a paleopolyploid, is an evolutionary "outpost" among flowering plants, representing a basal lineage (the magnoliid clade) near the origin of the flowering plants themselves. Following centuries of selective breeding, avocado germplasm has been characterized at the level of microsatellite and RFLP markers. Nonetheless, little is known beyond these general diversity estimates, and much work remains to be done to develop avocado as a major subtropical-zone crop. Among the goals of avocado improvement are to develop varieties with fruit that will "store" better on the tree, show uniform ripening and have better post-harvest storage. Avocado transcriptome sequencing, genome mapping and partial genomic sequencing will represent a major step toward the goal of sequencing the entire avocado genome, which is expected to aid in improving avocado varieties and production, as well as understanding the evolution of flowers from non-flowering seed plants (gymnosperms). Additionally, continued evolutionary and other comparative studies of flower and fruit development in different avocado strains can be accomplished at the gene expression level, including in comparison with avocado relatives, and these should provide important insights into the genetic regulation of fruit development in basal angiosperms.

Entities:  

Mesh:

Year:  2008        PMID: 18348249     DOI: 10.1002/bies.20721

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  12 in total

1.  A proposed conserved role for an avocado FW2.2-like gene as a negative regulator of fruit cell division.

Authors:  Yardena Dahan; Revital Rosenfeld; Victor Zadiranov; Vered Irihimovitch
Journal:  Planta       Date:  2010-06-12       Impact factor: 4.116

2.  EST sequencing and gene expression profiling of defence-related genes from Persea americana infected with Phytophthora cinnamomi.

Authors:  Waheed Mahomed; Noëlani van den Berg
Journal:  BMC Plant Biol       Date:  2011-11-23       Impact factor: 4.215

3.  Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp.

Authors:  Aruna Kilaru; Xia Cao; Parker B Dabbs; Ha-Jung Sung; Md Mahbubur Rahman; Nicholas Thrower; Greg Zynda; Ram Podicheti; Enrique Ibarra-Laclette; Luis Herrera-Estrella; Keithanne Mockaitis; John B Ohlrogge
Journal:  BMC Plant Biol       Date:  2015-08-16       Impact factor: 4.215

Review 4.  Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era.

Authors:  Andre S Chanderbali; Brent A Berger; Dianella G Howarth; Pamela S Soltis; Douglas E Soltis
Journal:  Genetics       Date:  2016-04       Impact factor: 4.562

5.  Transcriptome Analysis of Cell Wall and NAC Domain Transcription Factor Genes during Elaeis guineensis Fruit Ripening: Evidence for Widespread Conservation within Monocot and Eudicot Lineages.

Authors:  Timothy J Tranbarger; Kim Fooyontphanich; Peerapat Roongsattham; Maxime Pizot; Myriam Collin; Chatchawan Jantasuriyarat; Potjamarn Suraninpong; Somvong Tragoonrung; Stéphane Dussert; Jean-Luc Verdeil; Fabienne Morcillo
Journal:  Front Plant Sci       Date:  2017-04-25       Impact factor: 5.753

6.  Genetic Structure and Selection of a Core Collection for Long Term Conservation of Avocado in Mexico.

Authors:  Luis F Guzmán; Ryoko Machida-Hirano; Ernesto Borrayo; Moisés Cortés-Cruz; María Del Carmen Espíndola-Barquera; Elena Heredia García
Journal:  Front Plant Sci       Date:  2017-02-24       Impact factor: 5.753

7.  De novo assembly of Persea americana cv. 'Hass' transcriptome during fruit development.

Authors:  Cristian Vergara-Pulgar; Karin Rothkegel; Mauricio González-Agüero; Romina Pedreschi; Reinaldo Campos-Vargas; Bruno G Defilippi; Claudio Meneses
Journal:  BMC Genomics       Date:  2019-02-06       Impact factor: 3.969

8.  Evolutionary analysis of six chloroplast genomes from three Persea americana ecological races: Insights into sequence divergences and phylogenetic relationships.

Authors:  Yu Ge; Xiangshu Dong; Bin Wu; Nan Wang; Di Chen; Haihong Chen; Minghong Zou; Zining Xu; Lin Tan; Rulin Zhan
Journal:  PLoS One       Date:  2019-09-18       Impact factor: 3.240

9.  Comparison of next generation sequencing technologies for transcriptome characterization.

Authors:  P Kerr Wall; Jim Leebens-Mack; André S Chanderbali; Abdelali Barakat; Erik Wolcott; Haiying Liang; Lena Landherr; Lynn P Tomsho; Yi Hu; John E Carlson; Hong Ma; Stephan C Schuster; Douglas E Soltis; Pamela S Soltis; Naomi Altman; Claude W dePamphilis
Journal:  BMC Genomics       Date:  2009-08-01       Impact factor: 3.969

10.  Deep sequencing of the Mexican avocado transcriptome, an ancient angiosperm with a high content of fatty acids.

Authors:  Enrique Ibarra-Laclette; Alfonso Méndez-Bravo; Claudia Anahí Pérez-Torres; Victor A Albert; Keithanne Mockaitis; Aruna Kilaru; Rodolfo López-Gómez; Jacob Israel Cervantes-Luevano; Luis Herrera-Estrella
Journal:  BMC Genomics       Date:  2015-08-13       Impact factor: 3.969

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